Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EL097_RS08980 Genome accession   NZ_LR134293
Coordinates   1770804..1772033 (-) Length   409 a.a.
NCBI ID   WP_003048166.1    Uniprot ID   A0AAE4Q739
Organism   Streptococcus canis strain NCTC12191     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1765804..1777033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS08950 (NCTC12191_01797) - 1766579..1766737 (+) 159 WP_003048173.1 helix-turn-helix domain-containing protein -
  EL097_RS08955 (NCTC12191_01798) - 1766790..1767170 (+) 381 WP_003048172.1 hypothetical protein -
  EL097_RS08960 (NCTC12191_01799) - 1767251..1768066 (+) 816 WP_099983066.1 IS982 family transposase -
  EL097_RS08965 - 1768211..1769176 (+) 966 Protein_1678 IS30 family transposase -
  EL097_RS08970 (NCTC12191_01802) - 1769305..1770045 (-) 741 WP_003048168.1 hypothetical protein -
  EL097_RS08975 (NCTC12191_01803) yihA 1770195..1770794 (-) 600 WP_003048167.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EL097_RS08980 (NCTC12191_01804) clpX 1770804..1772033 (-) 1230 WP_003048166.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EL097_RS08990 (NCTC12191_01806) - 1772381..1772878 (-) 498 WP_003048161.1 dihydrofolate reductase -
  EL097_RS08995 (NCTC12191_01807) - 1772958..1773797 (-) 840 WP_003048159.1 thymidylate synthase -
  EL097_RS09000 (NCTC12191_01808) - 1774005..1775180 (+) 1176 WP_003048157.1 hydroxymethylglutaryl-CoA synthase -
  EL097_RS09005 (NCTC12191_01809) - 1775167..1776441 (+) 1275 WP_003048155.1 hydroxymethylglutaryl-CoA reductase, degradative -
  EL097_RS11255 - 1776539..1776793 (-) 255 WP_099983065.1 IS3 family transposase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44970.51 Da        Isoelectric Point: 4.6207

>NTDB_id=1120519 EL097_RS08980 WP_003048166.1 1770804..1772033(-) (clpX) [Streptococcus canis strain NCTC12191]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLNILNQYVVGQDR
AKRALAVAVYNHYKRVSFAESRDDEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIASKAIERKTGARGLRSIIEETMLDIMFEVPSQEDVTKVRITKAAVEG
KAKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1120519 EL097_RS08980 WP_003048166.1 1770804..1772033(-) (clpX) [Streptococcus canis strain NCTC12191]
ATGGCAGGAAATCGTACTAACGATATTAAGGTATATTGTTCATTTTGTGGCAAAAGCCAAGATGAAGTCAAAAAAATCAT
TGCAGGGAACAACGTTTTTATTTGTAATGAATGTGTAGCCCTATCACAAGAAATTATCAAAGAAGAATTGGCAGAAGAAG
TACTGGCTGATTTAACAGAGGTTCCAAAACCAAAAGAACTTCTTAATATTTTAAACCAATACGTGGTTGGTCAAGACCGT
GCCAAACGGGCCTTAGCAGTTGCAGTCTATAATCATTACAAGCGTGTTTCATTTGCTGAAAGCCGTGATGACGAAGATGT
TGATTTGCAAAAATCAAATATTTTAATGATTGGCCCAACAGGCTCTGGAAAGACGTTTTTGGCACAGACATTGGCTAAGA
GTTTAAATGTGCCTTTTGCTATTGCAGATGCTACCTCCTTAACAGAAGCTGGATATGTGGGAGAGGACGTTGAAAATATC
CTTCTCAAACTGATTCAAGCAGCGGATTATAATGTGGAGCGAGCAGAGCGTGGCATCATTTATGTTGATGAAATTGATAA
GATTGCTAAAAAAGGTGAGAATGTGTCCATCACACGAGATGTGTCAGGCGAGGGAGTACAACAGGCTCTGTTAAAAATTA
TTGAAGGTACTGTTGCGAGTGTTCCTCCTCAAGGTGGGCGAAAGCACCCTAATCAGGAAATGATTCAAATTGATACAAAA
AATATCTTATTCATTGTTGGTGGGGCATTTGATGGCATTGAGGAGATTGTTAAACAGCGTCTAGGGGAAAAAATCATTGG
TTTTGGTCAAAACAGCCGTAAAATTGATGATAATGCTTCTTACATGCAAGAAATTATATCAGAAGATATCCAAAAATTTG
GTCTTATTCCTGAATTTATTGGCCGTTTACCAGTTGTGGCAGCCCTTGAACAGCTTAACACCTCAGACTTGATCCAAATA
TTAACAGAGCCAAGAAATGCTCTTGTTAAACAATACCAAGCCTTGTTATCTTATGATGGTGTTGAATTAGAATTTGAGAA
GGGTGCCCTTGAAGCCATTGCAAGTAAAGCGATTGAACGCAAAACAGGAGCACGTGGTCTCCGTTCTATCATTGAAGAAA
CCATGTTGGACATTATGTTTGAAGTGCCAAGTCAAGAAGATGTGACTAAAGTTCGTATCACCAAGGCTGCAGTTGAAGGT
AAGGCAAAACCCGTTTTAGAAACAGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.487

100

0.895
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.853

98.044

0.577

Multiple sequence alignment