Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   EL084_RS00945 Genome accession   NZ_LR134292
Coordinates   179505..180551 (+) Length   348 a.a.
NCBI ID   WP_024344767.1    Uniprot ID   A0A1G9P4A5
Organism   Streptococcus equinus strain NCTC10389     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 174505..185551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS00930 (NCTC10389_00195) - 175772..177424 (+) 1653 WP_126439922.1 peptide ABC transporter substrate-binding protein -
  EL084_RS00935 (NCTC10389_00196) - 177536..178450 (+) 915 WP_003067572.1 ABC transporter permease -
  EL084_RS00940 (NCTC10389_00197) - 178462..179493 (+) 1032 WP_115254875.1 ABC transporter permease -
  EL084_RS00945 (NCTC10389_00198) oppD 179505..180551 (+) 1047 WP_024344767.1 ABC transporter ATP-binding protein Regulator
  EL084_RS00950 (NCTC10389_00199) amiF 180551..181483 (+) 933 WP_003067560.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38551.10 Da        Isoelectric Point: 4.9467

>NTDB_id=1120422 EL084_RS00945 WP_024344767.1 179505..180551(+) (oppD) [Streptococcus equinus strain NCTC10389]
MSEETILQVKNLHVDFHTYAGEIKAIRDVNFDLKKGETLAIVGESGSGKSVTTKTLMGLSASNATITGEIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEAWARALDLMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDVLIADEPTTALDVTIQAQILNLMKKIQKESGSSIIFITHDLGVVAGMADRVAVMYAGKVIEYGSV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHYAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1120422 EL084_RS00945 WP_024344767.1 179505..180551(+) (oppD) [Streptococcus equinus strain NCTC10389]
ATGAGTGAAGAAACAATTTTACAAGTTAAAAACCTCCATGTAGATTTCCATACCTACGCTGGAGAAATTAAAGCTATCCG
TGATGTCAATTTTGACTTGAAGAAGGGTGAAACCCTTGCTATCGTAGGTGAATCTGGATCAGGTAAATCTGTAACTACAA
AAACATTGATGGGGCTTTCTGCTTCAAATGCAACAATTACAGGTGAAATTGACTTTAAAGGTAAAAAACTTACTGAACTA
AAAGAAGACGAATGGATTAAAGTACGTGGAAATGAAATTGCGATGATTTTCCAAGATCCAATGACAAGTCTTGACCCAAC
AATGAAAATTGGTCAACAGATTGCTGAACCAATTATGATTCACGAAAAAGTTTCAAAACAAGAAGCTTGGGCTCGTGCGC
TAGATTTGATGAAAAATGTTGGTATCCCAAATGCTGAAGAACACATCAATGATTACCCACACCAATGGTCAGGTGGTATG
CGTCAACGTGCGGTTATTGCGATTGCACTTGCAGCTAATCCAGATGTTCTGATTGCAGATGAACCAACAACTGCTTTGGA
CGTTACAATTCAAGCACAAATACTTAACTTGATGAAGAAAATTCAAAAAGAAAGTGGTTCATCAATTATCTTCATCACAC
ACGACCTTGGTGTTGTTGCTGGTATGGCTGATCGCGTAGCAGTTATGTATGCTGGTAAAGTGATTGAATACGGTTCTGTT
GATGAAGTATTTTACAATCCACAACATCCATATACTTGGGGCTTGCTAAACTCAATGCCAACGACTGATACAGAAGCTGG
TAGTCTACAATCAATTCCAGGTACTCCACCAGATCTTCTTAATCCACCAAAAGGTGATGCTTTTGCTCCGCGTAATGAAT
TTGCACTAGACATTGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGTGACACACACTATGCAGCAACCTGGTTGCTA
GATGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAGCGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G9P4A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.115

99.713

0.799
  amiE Streptococcus salivarius strain HSISS4

57.018

98.276

0.56
  amiE Streptococcus thermophilus LMG 18311

57.612

96.264

0.555
  amiE Streptococcus thermophilus LMD-9

57.612

96.264

0.555

Multiple sequence alignment