Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL087_RS02665 Genome accession   NZ_LR134288
Coordinates   532587..534389 (+) Length   600 a.a.
NCBI ID   WP_003040270.1    Uniprot ID   A0AAP2K908
Organism   Streptococcus milleri strain NCTC11169     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 527587..539389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL087_RS02645 (NCTC11169_00532) - 529291..529608 (+) 318 WP_126406699.1 PTS cellobiose transporter subunit IIA -
  EL087_RS02650 (NCTC11169_00533) - 529632..530138 (+) 507 WP_070671153.1 hypothetical protein -
  EL087_RS02655 (NCTC11169_00534) celB 530178..531521 (+) 1344 WP_126406703.1 PTS cellobiose transporter subunit IIC -
  EL087_RS02660 (NCTC11169_00535) coiA 531610..532635 (+) 1026 WP_126406705.1 competence protein CoiA Machinery gene
  EL087_RS02665 (NCTC11169_00536) pepF 532587..534389 (+) 1803 WP_003040270.1 oligoendopeptidase F Regulator
  EL087_RS02670 (NCTC11169_00537) - 534391..535074 (+) 684 WP_003040265.1 O-methyltransferase -
  EL087_RS02675 (NCTC11169_00538) prsA 535181..536119 (+) 939 WP_059220537.1 peptidylprolyl isomerase PrsA -
  EL087_RS02680 - 536258..536827 (+) 570 WP_164558124.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69206.12 Da        Isoelectric Point: 4.5375

>NTDB_id=1120253 EL087_RS02665 WP_003040270.1 532587..534389(+) (pepF) [Streptococcus milleri strain NCTC11169]
MAKQRNEIEEKYTWDLTTIFPTDEAFEAELSQVSKELKGASSLAGHLLDSADSLLKTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQAFAFYEPEFMAITDEQYQTFLTEKPELQIYQHFFDKLLQKKPHILSQREEELLAGA
SEIFSAAGDTFGILDNADIVFPTVHDEEGNEVQLTHGNYISLVESKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRNFSSAREAALSANFIPESVYDSLVSAVNKHLPLLHRYIALRAKILGLSDLKMYDLYTPLSEADYKFTYEEALT
KAEEVLAILGEDYLSRVKEAFSDRWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTREN
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNDLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYSTGFSAASALADKIVNGTQEDKEKYLNYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1120253 EL087_RS02665 WP_003040270.1 532587..534389(+) (pepF) [Streptococcus milleri strain NCTC11169]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAACAACGATTTTCCCAACAGATGAAGCTTTTGA
GGCAGAGTTAAGTCAAGTTTCAAAAGAATTAAAAGGAGCCAGCAGCTTAGCAGGTCATCTTTTGGATTCGGCTGATAGCC
TTTTAAAAACAACAGAAATCCAATTGGACTTAATGCGTCGCATAGAAAAGCTCTATTCCTATGCTCACATGAAAAATGAC
CAAGATACGCGCGTGGCAAAATACCAAGAATACCAAGCCAAGGGTATGGCTATTTATAGTGAATTCGGACAGGCCTTTGC
TTTCTATGAACCAGAATTTATGGCAATCACAGACGAGCAATATCAGACTTTCTTAACTGAAAAGCCTGAATTGCAAATCT
ATCAGCACTTCTTTGATAAGCTACTGCAAAAGAAACCTCATATCCTTTCTCAGCGTGAGGAAGAATTGTTGGCAGGTGCT
AGTGAAATTTTTAGTGCTGCGGGTGATACTTTTGGAATCTTGGACAATGCCGATATTGTCTTTCCAACCGTACACGACGA
AGAAGGAAATGAAGTGCAATTGACGCACGGAAATTACATCAGTCTAGTGGAGTCGAAAAATCGTACAGTCCGCAAGGAAG
CTTATGAAGCGCTTTACAGCGTCTATGAGCAATACCAACACACTTATGCTAAGACACTCCAAACGAATGTTAAAGTTCAT
AATTACAATGCCAAAGTTCGTAATTTTTCTTCTGCGCGTGAAGCTGCCTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGATAGCTTAGTGTCTGCGGTCAACAAACATTTGCCACTCTTACATCGCTATATTGCGCTACGTGCAAAGATTTTAGGTC
TTTCTGATTTGAAAATGTACGACCTCTATACACCATTGTCAGAAGCAGATTACAAATTTACTTATGAGGAAGCCTTGACG
AAAGCAGAAGAAGTCTTAGCTATCCTTGGAGAAGATTATCTAAGTCGAGTAAAAGAAGCCTTTTCAGATCGTTGGATTGA
TGTTTATGAAAACCAAGGCAAGCGCTCTGGGGCTTATTCTGGTGGTTCTTACGATACCAATGCTTTTATGTTGCTCAACT
GGCAAGATACGTTGGACAATCTTTTTACGCTGGTTCATGAAACTGGTCACAGCATGCATTCCAGCTACACTCGTGAAAAT
CAGCCGTACGTTTACGGAGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACGACCAACGAAAATATCCTTACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACCCGCTTTGCGATTCTGAATCATTTCTTGGACGGTTTCCGTGGAACTGTTT
TCCGCCAAACTCAATTTGCCGAGTTTGAACATGCCATTCACAAAGCTGACCAAGAAGGTCAAGTCTTGACGAGTGAATTT
TTGAATGATTTGTACGCAGATTTGAATGAAAAATATTATGGTTTGACGAAAGAGGACAACCCACAAATTCAATACGAATG
GGCACGGATTCCGCATTTCTACTATGATTACTATGTTTTCCAATACTCAACCGGTTTCTCAGCTGCTTCTGCCTTAGCTG
ATAAGATTGTTAACGGAACGCAAGAAGATAAAGAGAAGTATCTCAACTACTTGAAAGCAGGAAATTCTGATTATCCGCTA
AATGTCATTAAAAAAGCTGGTGTTGATATGGAAAAAGAAGACTATCTCAATGCTGCCTTTGCAGTCTTTGAGCGTCGTCT
TGATGAATTTGAAGCACTTGTAGAAAAGTTAGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.96

99.333

0.685

Multiple sequence alignment