Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   EL111_RS06765 Genome accession   NZ_LR134287
Coordinates   1440674..1444303 (+) Length   1209 a.a.
NCBI ID   WP_123795446.1    Uniprot ID   A0A5P3MQ41
Organism   Neisseria animalis strain NCTC10212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435674..1449303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL111_RS06745 (NCTC10212_01398) ispD 1436555..1437256 (-) 702 WP_123795442.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EL111_RS06750 (NCTC10212_01399) dnaQ 1437253..1437975 (-) 723 WP_123795443.1 DNA polymerase III subunit epsilon -
  EL111_RS06755 (NCTC10212_01400) - 1438121..1439578 (+) 1458 WP_123795444.1 patatin-like phospholipase family protein -
  EL111_RS06760 (NCTC10212_01401) - 1439850..1440572 (+) 723 WP_123795445.1 epoxyqueuosine reductase QueH -
  EL111_RS06765 (NCTC10212_01402) recB 1440674..1444303 (+) 3630 WP_123795446.1 exodeoxyribonuclease V subunit beta Machinery gene
  EL111_RS06770 (NCTC10212_01403) rbfA 1444421..1444792 (+) 372 WP_123795447.1 30S ribosome-binding factor RbfA -
  EL111_RS06775 (NCTC10212_01404) - 1445134..1446207 (+) 1074 WP_123795448.1 calcium:proton antiporter -
  EL111_RS06780 (NCTC10212_01405) truB 1446408..1447319 (+) 912 WP_126325848.1 tRNA pseudouridine(55) synthase TruB -

Sequence

Protein


Download         Length: 1209 a.a.        Molecular weight: 136523.69 Da        Isoelectric Point: 6.4023

>NTDB_id=1120216 EL111_RS06765 WP_123795446.1 1440674..1444303(+) (recB) [Neisseria animalis strain NCTC10212]
MTTAQPFHPLLVPISGTNLIEASAGTGKTYGIAALFTRLVVLEQMPVENILVVTFTKAATAELKTRLRNRLDNVLQILEA
VENANENTDGLTMYCHQEYAGDTFLPELLQKALAQETQARLVVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQTQFD
VELSEEQHDRLLVPAQDFWRKRVSHDPVTARLVFKHNQTPQKILQGIQRFINRPYLVCRRPENDLPQAQHQAAETWQSIR
LKLADLEETFWRVHPALNGNSYKKNTFANLFAVLKTADGQNRLPEHSDKPLDKLPMFAADILEAKIKKGQTPDLAAFADL
QALANLGRDLERLAAAEQHALTLLQLDLLEHLNSALAQQKKTRRERGFDDLLLDVYTALTDNPHRHTLAETVAQNWRVAL
IDEFQDTDPLQYEIFRKIFINQERPLFLVGDPKQAIYSFRGADIYAYLQAAADARSHYTLTVNYRSHAKLVNSIGALFRQ
KDRPFVLANIDYAEVGAAREHSRLNPPRPAVSVRWLNQNTGKSENKDLLRKQAAEYCADEIAYALFEAAKGRLHFKDRPL
QSGDIAVLVRTHNEGSLIAKSLKKRKIQSVLLHRESVFATAEAAALAALIGFWLTRRTADLRFVLGSVLFHYTAEQLYAL
NQDDAALLAWTDSAREAATLWKQHGFYAAMQGFAARHHIETRLLADGMERSLTNYQQLLELLAAEDEQSRTPASLHKWLL
EQIHAATEDKAAGEHHTVRLESDEALVKIVTMHASKGLQYPLVYCPFVWDAAAIKPNDWQILHRRDGSSELLAKQQLDEA
DQIQLGDETASENLRLLYVALTRAEEQLNIYAGHCSNTADNTFAYLLEGGAAAERQNVHQTYKNEKNAAAQAQMLKNNWL
RFIEAQQHNPDVEFAFTEEAPYTAFIANRSENAACRFQAAEIPARRFEFVRHTSFTGLSRHVKTVESEREELQPAVDAAE
SAILPEMPSANPHTDDVCHTIHHFPRGVKAGVCLHEILERLDFSAPAIEQSTQTAEILARYGFEDIWLPAVNAMIDYCRT
TPLTGNHALGNIKAACRLPEMGFTLYMRDFNLTALRAWFARPDSGLPPECIQASEHLDFQDLQGFLNGFIDMVCQDADGN
VCVIDYKSNHLGNDETAYTTAAMNEAMAHHHYYLQALIYAIAVARHFKLRGQTLEKISARYLFLRGMDGSQNGIWSWDIP
TADLTEWLS

Nucleotide


Download         Length: 3630 bp        

>NTDB_id=1120216 EL111_RS06765 WP_123795446.1 1440674..1444303(+) (recB) [Neisseria animalis strain NCTC10212]
ATGACCACCGCCCAGCCTTTCCACCCTCTGCTCGTTCCCATCAGCGGCACCAACCTGATTGAAGCCTCCGCCGGCACAGG
CAAAACATACGGCATTGCCGCGCTGTTTACCCGGCTGGTGGTACTGGAACAAATGCCGGTAGAAAACATTTTAGTCGTTA
CCTTCACCAAAGCAGCAACCGCCGAATTGAAAACCCGTCTGCGTAACCGGCTGGACAACGTCTTGCAGATTTTAGAAGCC
GTTGAAAACGCAAACGAAAATACAGACGGCCTTACCATGTACTGCCATCAGGAATATGCCGGAGACACCTTTCTGCCCGA
GCTGCTGCAAAAAGCCTTGGCACAAGAAACCCAAGCGCGGCTGGTGGTACGCCTGAAAGCCGCCATCGGACAATTCGACA
ACGCTGCCATTTACACCATACACGGCTTCTGCCAACGCATCTTGCGCGACTACGCTTTTCTCTGCCAAACGCAATTCGAC
GTAGAATTAAGCGAAGAGCAGCACGACCGCCTGCTTGTTCCCGCACAAGACTTCTGGCGCAAACGGGTCAGCCACGACCC
CGTTACCGCCCGTCTGGTCTTCAAGCACAACCAAACCCCGCAGAAAATCCTGCAGGGGATACAACGTTTCATCAACCGCC
CCTATCTGGTTTGCAGACGGCCTGAAAACGATTTGCCGCAAGCGCAGCATCAGGCTGCCGAAACATGGCAGAGCATCCGC
CTGAAACTGGCGGATTTGGAAGAAACATTCTGGCGCGTCCACCCCGCCCTAAACGGCAACAGCTACAAGAAAAACACCTT
TGCCAACCTGTTTGCCGTGCTCAAAACCGCAGACGGCCAAAACCGGCTGCCGGAACACAGCGACAAACCGCTCGACAAGC
TGCCGATGTTTGCCGCCGACATACTGGAAGCAAAAATCAAAAAAGGCCAAACTCCCGACCTTGCCGCCTTTGCCGACTTG
CAGGCTCTGGCAAACTTAGGACGCGACTTGGAGCGTCTTGCCGCAGCAGAACAACACGCCCTGACCCTGTTACAGCTCGA
CCTGCTCGAACACCTGAACAGCGCGCTGGCGCAACAGAAAAAAACGCGCCGCGAACGCGGTTTCGATGATCTGCTGCTGG
ATGTTTACACCGCCCTGACCGACAATCCCCACCGCCACACACTTGCCGAAACCGTGGCGCAAAACTGGCGCGTCGCACTG
ATCGACGAATTTCAGGATACCGATCCCTTACAGTACGAAATCTTCCGAAAAATATTCATCAACCAAGAACGCCCGTTGTT
TTTAGTCGGCGACCCCAAGCAGGCCATTTACAGCTTTCGCGGTGCAGATATTTATGCCTACCTGCAAGCTGCCGCCGATG
CCCGCTCCCATTACACGCTGACCGTCAACTACCGCAGCCATGCCAAACTGGTCAACAGCATCGGCGCGCTGTTCCGCCAA
AAAGACCGCCCGTTTGTGTTAGCAAACATCGACTATGCAGAAGTCGGCGCCGCACGCGAACACAGCCGCCTGAATCCGCC
ACGCCCCGCCGTAAGCGTCCGCTGGCTGAACCAAAACACCGGCAAAAGCGAAAACAAAGACCTGCTCCGCAAACAAGCAG
CGGAATATTGTGCCGATGAAATTGCCTATGCGCTTTTTGAGGCCGCCAAAGGCCGTCTGCATTTTAAAGACCGCCCGTTG
CAGTCAGGCGACATTGCTGTCTTGGTTCGGACGCACAACGAAGGCAGCCTTATTGCCAAGTCTCTGAAAAAAAGAAAAAT
CCAAAGCGTACTGCTGCACCGCGAATCGGTATTTGCCACAGCCGAAGCCGCCGCGCTGGCCGCCCTTATCGGTTTTTGGC
TTACCCGCCGCACCGCAGATTTACGTTTCGTTTTGGGCAGCGTTCTGTTTCATTACACCGCAGAGCAGTTGTACGCACTC
AACCAAGACGATGCCGCCTTGCTTGCATGGACAGACTCCGCCCGCGAAGCCGCAACATTATGGAAACAGCACGGTTTTTA
CGCCGCCATGCAAGGCTTTGCCGCCCGGCACCATATCGAAACCCGCCTGCTTGCAGACGGCATGGAGCGCAGCCTGACCA
ACTACCAGCAATTATTAGAGCTGCTTGCGGCCGAAGACGAGCAAAGCCGCACGCCCGCGTCCCTGCACAAATGGCTGCTG
GAACAAATTCATGCCGCCACCGAAGACAAAGCCGCAGGCGAACACCACACCGTGCGTTTGGAAAGCGACGAAGCCTTGGT
CAAAATCGTAACCATGCATGCTTCCAAAGGTTTGCAGTATCCCTTGGTGTACTGCCCGTTTGTTTGGGACGCCGCCGCCA
TCAAACCCAACGATTGGCAGATTCTGCACCGCCGAGACGGTTCTTCCGAGCTGTTGGCCAAACAGCAGCTTGACGAAGCC
GATCAAATCCAGCTTGGCGATGAAACCGCCTCCGAAAACCTGCGCTTGCTGTATGTTGCCCTAACCCGTGCCGAAGAACA
GCTGAACATCTATGCCGGACATTGTTCCAATACTGCCGACAATACGTTTGCCTACCTGCTCGAAGGCGGCGCAGCGGCAG
AACGTCAAAATGTGCATCAAACTTATAAAAACGAAAAAAATGCAGCGGCACAGGCGCAGATGTTGAAAAATAATTGGCTC
AGGTTTATCGAAGCCCAACAGCATAATCCTGATGTTGAATTTGCTTTCACGGAAGAAGCACCTTATACTGCTTTTATTGC
CAACCGCAGTGAAAACGCTGCCTGCCGTTTTCAAGCAGCCGAAATTCCGGCACGCCGGTTTGAGTTTGTCCGCCACACCA
GTTTTACCGGTCTCAGCCGCCATGTGAAAACCGTTGAAAGCGAACGCGAAGAATTGCAGCCGGCCGTTGATGCCGCCGAA
AGCGCAATACTGCCTGAAATGCCGTCTGCAAATCCGCATACGGACGATGTGTGCCACACTATCCACCACTTCCCGCGCGG
CGTGAAAGCCGGGGTGTGCCTGCATGAAATACTGGAGCGGCTCGATTTTTCCGCACCCGCCATCGAACAAAGCACGCAAA
CCGCCGAAATTCTTGCGCGATACGGGTTTGAAGACATCTGGCTGCCGGCGGTCAACGCCATGATTGATTACTGCCGTACC
ACGCCGCTTACCGGAAACCATGCGCTCGGGAACATCAAAGCCGCCTGCCGTCTGCCGGAAATGGGCTTTACCCTGTATAT
GCGAGATTTCAACCTGACTGCCTTACGCGCATGGTTTGCCCGCCCCGACAGCGGTTTGCCGCCCGAATGCATTCAAGCCT
CGGAACACTTGGACTTTCAAGATTTGCAAGGGTTTCTTAACGGCTTTATCGATATGGTCTGTCAAGATGCAGACGGCAAT
GTTTGCGTCATCGACTACAAGTCTAACCATTTGGGGAATGACGAAACCGCCTATACCACCGCCGCCATGAACGAAGCGAT
GGCACACCATCATTACTATCTGCAAGCATTGATTTACGCCATTGCCGTTGCCCGCCATTTCAAGCTGCGCGGACAAACTT
TAGAGAAAATCTCCGCCCGCTACCTGTTTTTGCGCGGCATGGACGGTTCGCAAAACGGTATCTGGAGCTGGGACATTCCT
ACCGCAGATTTGACAGAATGGTTATCATGA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1091-1185)

UvrD-like helicase C-terminal domain (UvrD_C)

(458-830)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3MQ41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

62.241

99.669

0.62

Multiple sequence alignment