Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EL111_RS03995 Genome accession   NZ_LR134287
Coordinates   849908..850711 (-) Length   267 a.a.
NCBI ID   WP_123794914.1    Uniprot ID   A0A5P3MSB0
Organism   Neisseria animalis strain NCTC10212     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 844908..855711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL111_RS03975 (NCTC10212_00820) clpX 845433..846737 (-) 1305 WP_123794917.1 ATP-dependent Clp protease ATP-binding subunit ClpX -
  EL111_RS03980 (NCTC10212_00821) - 847150..848022 (+) 873 WP_415065783.1 serine hydrolase -
  EL111_RS03985 (NCTC10212_00822) - 848190..848957 (+) 768 WP_123794961.1 M48 family metallopeptidase -
  EL111_RS03990 (NCTC10212_00823) tmk 849134..849760 (-) 627 WP_123794915.1 dTMP kinase -
  EL111_RS03995 (NCTC10212_00824) comL 849908..850711 (-) 804 WP_123794914.1 outer membrane protein assembly factor BamD Machinery gene
  EL111_RS04000 (NCTC10212_00825) rluD 850710..851831 (+) 1122 WP_123794913.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL111_RS04005 (NCTC10212_00826) - 851977..853893 (+) 1917 WP_123794912.1 ATP-binding cassette domain-containing protein -
  EL111_RS04010 (NCTC10212_00827) - 853973..854359 (+) 387 WP_162842958.1 DUF4124 domain-containing protein -
  EL111_RS10820 (NCTC10212_00828) - 854398..854922 (+) 525 WP_162842957.1 DUF4124 domain-containing protein -
  EL111_RS04020 (NCTC10212_00829) hfq 855089..855388 (+) 300 WP_123794960.1 RNA chaperone Hfq -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30986.97 Da        Isoelectric Point: 8.5156

>NTDB_id=1120209 EL111_RS03995 WP_123794914.1 849908..850711(-) (comL) [Neisseria animalis strain NCTC10212]
MKKILLIVSLSLALGACANTGTIDKDAQITQDWSVQQLYAEAQDELNSSNYTRAIKLYELLESRFPYGRYAQQSQLDTAY
AYYKDDEPAKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYAAFAQLIQHYPNS
KYAPDATARMVKLVDALGGNELSVARYYMKRGAYIAAVNRAQKIVEQYQNTRYVEESLAMMEAAYKKLDKPKLAEDTRRI
LAHNFPNSPYLQQEWRNSDIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1120209 EL111_RS03995 WP_123794914.1 849908..850711(-) (comL) [Neisseria animalis strain NCTC10212]
ATGAAAAAAATTCTTTTAATTGTTTCGTTAAGTCTGGCACTCGGTGCATGCGCCAATACCGGCACCATCGATAAAGACGC
GCAGATTACCCAAGATTGGAGCGTGCAGCAACTCTACGCGGAAGCGCAGGACGAGTTGAACAGCAGCAATTATACGCGAG
CCATCAAATTATATGAACTTTTAGAATCGCGTTTCCCCTACGGCCGCTATGCACAGCAGTCGCAACTGGATACTGCTTAC
GCCTATTATAAAGACGACGAGCCGGCCAAAGCCCTTGCCGCCATCGACCGCTTCCAGCGCCACCACCCGCAACATCCGAA
CATGGACTATGCGCTGTACCTGAAAGGTTTGGTGCTGTTTAACGAAGACCAATCGTTTTTGAACAAACTGGCTTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGTGATGCCTATGCTGCGTTTGCCCAACTGATTCAGCACTACCCCAACAGC
AAATACGCGCCGGACGCGACCGCCCGCATGGTCAAACTGGTGGACGCATTGGGCGGCAACGAATTATCGGTTGCCCGCTA
CTACATGAAACGCGGTGCCTACATCGCCGCCGTCAACCGCGCGCAAAAAATTGTCGAGCAATACCAAAACACCCGCTATG
TCGAAGAATCTCTGGCCATGATGGAAGCCGCCTACAAAAAACTCGACAAACCGAAGCTGGCAGAAGACACCCGCCGCATT
CTGGCACACAACTTCCCAAACAGCCCTTATCTGCAACAAGAATGGCGCAACAGCGACATTCCGTGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3MSB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

83.083

99.625

0.828
  comL Neisseria gonorrhoeae MS11

81.203

99.625

0.809

Multiple sequence alignment