Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EL100_RS06490 Genome accession   NZ_LR134285
Coordinates   1343637..1344446 (+) Length   269 a.a.
NCBI ID   WP_125374345.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338637..1349446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS06475 (NCTC3168_01329) - 1339959..1341008 (-) 1050 WP_126404595.1 DUF389 domain-containing protein -
  EL100_RS06480 (NCTC3168_01330) micA 1341588..1342289 (+) 702 WP_048717457.1 response regulator YycF Regulator
  EL100_RS06485 (NCTC3168_01331) micB 1342282..1343628 (+) 1347 WP_126404593.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL100_RS06490 (NCTC3168_01332) vicX 1343637..1344446 (+) 810 WP_125374345.1 MBL fold metallo-hydrolase Regulator
  EL100_RS06495 (NCTC3168_01333) - 1344659..1345048 (+) 390 WP_414386485.1 YbaN family protein -
  EL100_RS06500 (NCTC3168_01334) rnc 1345207..1345908 (+) 702 WP_126405060.1 ribonuclease III -
  EL100_RS06505 (NCTC3168_01335) smc 1345899..1349444 (+) 3546 WP_126404591.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29730.70 Da        Isoelectric Point: 5.7554

>NTDB_id=1120184 EL100_RS06490 WP_125374345.1 1343637..1344446(+) (vicX) [Streptococcus australis strain NCTC3168]
MDEKGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKITGLLAEIDRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGSKYLGKVDDSQKHLFEMGKTLTFGDLDVESFGVSHDAAAPQFYRFMKDGKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNKTKKIYLGHLSKENNIKELAHMTMVN
QLARADLAVGHDFEVLDTSPDTATPLVDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1120184 EL100_RS06490 WP_125374345.1 1343637..1344446(+) (vicX) [Streptococcus australis strain NCTC3168]
ATGGATGAAAAAGGGTTTAAGTATAGTATTTTAGCTTCGGGTTCGAGTGGTAATTCATTTTACCTAGAGACACCTAAGAA
AAAAATTCTAGTAGATGCAGGCTTGTCCGGGAAGAAGATTACAGGTTTGCTTGCAGAAATTGATCGCAAACCCGAAGATC
TTGACGCTATTTTGATCACACATGAACATTCGGATCACATTCATGGCGTTGGTGTGCTAGCTCGTAAATACGGGATGGAC
CTATACGCCAATGAAGCTACATGGAAGGCCATGGAGGGAAGCAAGTACCTTGGGAAGGTCGATGACTCCCAGAAACATCT
TTTTGAAATGGGCAAGACCTTAACCTTCGGGGATTTGGATGTGGAAAGTTTTGGTGTCAGTCATGATGCTGCGGCTCCCC
AGTTCTATCGTTTCATGAAGGATGGGAAGAGTTTTGTCATGCTGACGGATACAGGTTATGTCAGTGATCGGATGGCAGGG
ATTGTTGAAAATGCAGATGGCTATTTGATCGAGTCCAACCACGATGTGGAAATCCTACGAGCTGGCTCTTATGCTTGGCG
ATTAAAGCAACGGATCTTATCCGATTTGGGTCACCTCTCTAATGAAGATGGTGCGGATGCCATGATTCGGACACTAGGCA
ATAAGACCAAAAAGATTTATCTGGGCCACTTATCGAAGGAAAACAATATCAAGGAATTGGCCCATATGACCATGGTCAAT
CAATTGGCTCGAGCAGATTTGGCAGTGGGTCATGATTTTGAAGTGTTGGATACATCTCCAGATACAGCGACTCCATTAGT
AGATATCTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781

Multiple sequence alignment