Detailed information    

insolico Bioinformatically predicted

Overview

Name   lqsT   Type   Regulator
Locus tag   LOA_RS07785 Genome accession   NZ_CP004006
Coordinates   1591381..1592373 (-) Length   330 a.a.
NCBI ID   WP_042238845.1    Uniprot ID   W0BFU2
Organism   Legionella oakridgensis ATCC 33761 = DSM 21215     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1586381..1597373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOA_RS07760 (Loa_01737) gatB 1587557..1588990 (+) 1434 WP_025385837.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  LOA_RS07765 (Loa_01738) - 1589046..1589606 (-) 561 WP_025385838.1 L,D-transpeptidase -
  LOA_RS07770 (Loa_01739) - 1589682..1590089 (-) 408 WP_042238836.1 c-type cytochrome -
  LOA_RS07775 (Loa_01740) - 1590430..1591041 (+) 612 WP_025385840.1 iron-containing redox enzyme family protein -
  LOA_RS15320 (Loa_01741) lqsT 1591085..1591387 (-) 303 WP_238551189.1 ATP-binding protein Regulator
  LOA_RS07785 (Loa_01742) lqsT 1591381..1592373 (-) 993 WP_042238845.1 HAMP domain-containing histidine kinase Regulator
  LOA_RS07790 (Loa_01743) - 1592379..1593275 (-) 897 WP_025385841.1 DMT family transporter -
  LOA_RS07795 (Loa_01745) - 1593632..1594207 (-) 576 WP_025385842.1 TIGR00645 family protein -
  LOA_RS07800 (Loa_01746) - 1594340..1594630 (-) 291 WP_025384802.1 GIY-YIG nuclease family protein -
  LOA_RS07805 (Loa_01747) - 1594667..1595353 (-) 687 WP_025385843.1 IS66 family transposase -
  LOA_RS07810 (Loa_01748) - 1595677..1596435 (-) 759 WP_025385844.1 hypothetical protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 38477.55 Da        Isoelectric Point: 7.3439

>NTDB_id=112004 LOA_RS07785 WP_042238845.1 1591381..1592373(-) (lqsT) [Legionella oakridgensis ATCC 33761 = DSM 21215]
MPQDKKCEWYENIERGLAFFYHYLVKQTEATGQQINLFALVMMINFPLFGVIWRLDNPLSAEEFTFRIVATILCILLFSN
RFWPSSWLKFLPIFWYITLLFCLPFFFSYLTFLHNASTIWLMNCVSAVFFLLLVTRVLDALTLLALGFSLAFFSYFYVAE
HMMEYLPGDISLYSLATTFTAAIIIGALFARDREIMHDSRISGMRLLAGSLAHDLRTSLASIYLQAELQEMIVEKLNQSE
VQRDLKKSLDKMIRGIEMGNQLISMQLNNIQHEKFDTKYFTIQPIKMLLEKTLKEYPLKEQQKLLIKTDLTDDFLYGLKK
LLLKILSGIC

Nucleotide


Download         Length: 993 bp        

>NTDB_id=112004 LOA_RS07785 WP_042238845.1 1591381..1592373(-) (lqsT) [Legionella oakridgensis ATCC 33761 = DSM 21215]
ATGCCTCAAGATAAAAAATGTGAATGGTATGAGAACATTGAAAGAGGGTTGGCTTTTTTTTATCATTATTTAGTGAAACA
AACAGAAGCTACCGGCCAGCAAATTAATTTATTTGCTCTGGTGATGATGATCAATTTTCCTTTATTTGGTGTCATCTGGA
GGCTGGATAATCCATTATCGGCTGAAGAATTTACTTTTCGTATTGTTGCCACTATCTTATGCATTCTGCTTTTTTCCAAT
CGTTTTTGGCCCTCTTCTTGGTTAAAGTTTCTTCCCATTTTCTGGTATATTACGCTTTTGTTTTGTTTACCATTCTTTTT
TTCTTATTTAACGTTTCTGCATAATGCTTCTACCATTTGGTTGATGAATTGTGTTTCCGCCGTATTTTTTCTTTTATTAG
TCACCCGAGTTCTTGATGCACTTACCTTATTGGCATTAGGATTTAGCCTGGCCTTTTTTAGTTATTTTTATGTTGCGGAA
CATATGATGGAGTACCTCCCAGGTGATATCTCATTGTATAGTTTGGCAACCACTTTTACTGCGGCTATTATCATCGGTGC
TTTATTTGCCCGAGATAGAGAAATCATGCATGACAGTCGTATTTCGGGAATGCGCCTTTTGGCAGGCAGTCTGGCACATG
ATTTACGAACATCCCTTGCTAGTATTTACTTACAAGCTGAATTACAAGAAATGATTGTTGAAAAATTGAACCAATCGGAA
GTGCAGCGGGATTTAAAAAAGAGTCTTGATAAAATGATTCGTGGCATTGAGATGGGTAATCAACTGATCAGCATGCAATT
GAATAACATTCAACATGAAAAATTTGATACAAAATATTTCACGATTCAGCCGATTAAAATGTTATTAGAAAAAACGCTTA
AGGAATATCCACTTAAGGAACAGCAAAAATTACTTATAAAAACAGATTTAACGGATGATTTTTTGTATGGATTGAAGAAG
TTGCTTTTAAAAATCTTATCTGGAATTTGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0BFU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

62.925

89.091

0.561

Multiple sequence alignment