Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL079_RS04650 Genome accession   NZ_LR134283
Coordinates   957764..959566 (-) Length   600 a.a.
NCBI ID   WP_003031896.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC10713     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 952764..964566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS04635 - 955327..955896 (-) 570 WP_080559883.1 LURP-one-related/scramblase family protein -
  EL079_RS04640 (NCTC10713_00971) prsA 956034..956972 (-) 939 WP_003031860.1 peptidylprolyl isomerase PrsA -
  EL079_RS04645 (NCTC10713_00972) - 957079..957762 (-) 684 WP_003031902.1 O-methyltransferase -
  EL079_RS04650 (NCTC10713_00973) pepF 957764..959566 (-) 1803 WP_003031896.1 oligoendopeptidase F Regulator
  EL079_RS04655 (NCTC10713_00974) coiA 959518..960549 (-) 1032 WP_018543438.1 competence protein CoiA Machinery gene
  EL079_RS04660 (NCTC10713_00975) - 960846..962015 (-) 1170 WP_003031874.1 MFS transporter -
  EL079_RS04665 (NCTC10713_00976) - 962093..963469 (-) 1377 WP_003031862.1 DUF1958 domain-containing protein -
  EL079_RS04670 (NCTC10713_00977) - 963586..964293 (-) 708 WP_003031845.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69134.15 Da        Isoelectric Point: 4.6096

>NTDB_id=1120024 EL079_RS04650 WP_003031896.1 957764..959566(-) (pepF) [Streptococcus anginosus strain NCTC10713]
MAKQRNEIEEKYTWDLTTIFPTDEAFEAELTQVSKELKEASSLAGHLLGSADSLLKTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQAFAFYEPEFMAITDEQYQTFLAEKPELQIYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGDTFGILDNADIVFPTVHDEEGNEVQLTHGNYISLVESKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRNFSSAREAALSANFIPESVYDSLVSAVNKHLPLLHRYIALRAKILGLSDLKMYDLYTPLSEADYKFTYEEALT
KAEEVLAILGDDYLSRVKKAFSERWIDVHENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNDLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYSTGFSAASALADKIVNGTQEDKEKYLNYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1120024 EL079_RS04650 WP_003031896.1 957764..959566(-) (pepF) [Streptococcus anginosus strain NCTC10713]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAACAACGATTTTCCCAACAGATGAAGCTTTTGA
GGCAGAGTTAACTCAAGTTTCAAAAGAATTAAAAGAAGCCAGCAGCTTAGCCGGTCATCTTTTGGGCTCAGCTGACAGCC
TCTTAAAAACAACAGAAATCCAGTTGGACTTGATGCGTCGTATCGAAAAACTCTATTCCTATGCTCACATGAAAAATGAC
CAAGATACACGCGTGGCAAAATACCAAGAATACCAAGCCAAAGGAATGGCCATTTATAGTGAGTTCGGACAGGCCTTTGC
TTTCTATGAGCCAGAATTTATGGCAATCACAGACGAGCAATATCAGACTTTCTTAGCTGAAAAGCCTGAATTGCAAATCT
ATCAGCACTTCTTTGATAAGCTGCTGCAAAAGAAACCTCACATCCTTTCTCAACGTGAGGAAGAATTGTTGGCAGGTGCT
GGTGAAATTTTTAGTGCTGCAGGTGATACTTTTGGAATCTTGGACAATGCCGATATTGTCTTTCCAACCGTACATGACGA
AGAAGGAAATGAAGTGCAATTGACGCACGGAAATTACATTAGTTTAGTGGAGTCGAAAAATCGTACAGTCCGCAAGGAAG
CTTATGAAGCGCTTTACAGCGTCTATGAGCAATATCAACACACTTACGCCAAGACTCTCCAAACGAATGTTAAAGTTCAT
AATTACAATGCCAAAGTTCGTAATTTTTCTTCTGCGCGTGAAGCTGCCTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGATAGCTTAGTGTCTGCGGTAAACAAACATTTGCCACTCTTACATCGCTACATTGCGCTACGTGCAAAGATTTTAGGTC
TTTCTGATTTGAAAATGTACGACCTCTATACACCATTGTCAGAAGCAGATTACAAATTTACCTATGAAGAAGCTTTGACA
AAAGCAGAAGAAGTTTTAGCGATTCTCGGAGATGATTATCTTAGTCGAGTGAAAAAGGCCTTTTCAGAGCGCTGGATTGA
TGTTCATGAGAATCAAGGCAAACGCTCAGGAGCTTATTCTGGCGGTTCTTACGATACCAATGCTTTTATGTTGCTCAACT
GGCAAGATACGTTGGACAATCTTTTCACGCTGGTTCATGAAACGGGTCACAGCATGCATTCCAGCTATACTCGTGAAACA
CAGCCGTACGTTTACGGAGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACGACCAATGAAAATATCCTTACGGAGAA
ATTATTGGAAGAAGTAGATGATGATCAAACCCGCTTTGCGATTCTGAATCATTTCTTGGACGGTTTCCGTGGAACTGTTT
TCCGCCAAACTCAATTTGCCGAGTTTGAACATGCCATTCACAAAGCTGACCAAGAAGGTCAAGTCTTGACGAGTGAGTTT
TTGAATGATTTGTACGCAGATTTGAATGAAAAATATTATGGCTTGACGAAAGAGGACAACCCACAAATTCAATATGAATG
GGCACGGATTCCACATTTCTACTATGATTACTATGTTTTCCAATACTCAACCGGTTTCTCAGCTGCTTCTGCCTTAGCAG
ATAAGATTGTTAACGGAACGCAAGAAGATAAAGAGAAGTATCTCAACTACTTGAAAGCAGGAAATTCTGATTATCCGCTA
AATGTCATTAAAAAAGCTGGTGTAGATATGGAAAAAGAAGACTACCTCAATGCTGCCTTTGCAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTCGTAGAAAAGTTAGGACTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.295

99.333

0.688

Multiple sequence alignment