Detailed information NTG1119980

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: EL078_RS05370
• Genome accession: NZ_LR134282
• Coordinates: 1054035..1055264 (-)
• Length: 409 a.a.
• NCBI ID: WP_024343987.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain NCTC8140
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1049035..1060264

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL078_RS05350 (NCTC8140_01082)	-	1050258..1050926 (+)	669	WP_029875966.1	DUF1275 family protein	-
EL078_RS05355 (NCTC8140_01083)	mmuM	1050961..1051905 (-)	945	WP_126437889.1	homocysteine S-methyltransferase	-
EL078_RS05360 (NCTC8140_01084)	-	1051918..1053294 (-)	1377	WP_074483566.1	amino acid permease	-
EL078_RS05365 (NCTC8140_01085)	yihA	1053432..1054025 (-)	594	WP_004232043.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
EL078_RS05370 (NCTC8140_01086)	clpX	1054035..1055264 (-)	1230	WP_024343987.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
EL078_RS05380 (NCTC8140_01088)	-	1055487..1055981 (-)	495	WP_126437890.1	dihydrofolate reductase	-
EL078_RS05385 (NCTC8140_01089)	-	1056065..1056904 (-)	840	WP_021142433.1	thymidylate synthase	-
EL078_RS05390 (NCTC8140_01090)	-	1057234..1058412 (+)	1179	WP_045797846.1	hydroxymethylglutaryl-CoA synthase	-
EL078_RS05395 (NCTC8140_01091)	-	1058399..1059673 (+)	1275	WP_126437891.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45200.64 Da
• Isoelectric Point: 4.4317

>NTDB_id=1119980 EL078_RS05370 WP_024343987.1 1054035..1055264(-) (clpX) [Streptococcus equinus strain NCTC8140]
MVGNRTNDVKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLATLDEYVVGQER
AKRALAVAVYNHYKRVSFAESRDEEDVELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNRKIDEDASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLTADDLVRI
LTEPRNALVKQYQTLLSYDGVELEFDEDALQAIANKAIERKTGARGLRSIIEETMMDIMFEIPSREEVTKVRITKDAVEG
TDKPILETA

Nucleotide

• Length: 1230 bp

>NTDB_id=1119980 EL078_RS05370 WP_024343987.1 1054035..1055264(-) (clpX) [Streptococcus equinus strain NCTC8140]
ATGGTTGGAAATCGAACAAATGATGTAAAAGTTTATTGCTCATTTTGTGGAAAAAGCCAAGACGAAGTAAAAAAAATTAT
TGCAGGAAATAATGTTTTTATTTGTAATGAATGTGTGGCTTTATCCCAAGAGATTATTAAAGAAGAATTAGCAGAAGAAG
TTCTTGCAGATTTGGCAGAAGTTCCAAAACCAAAAGAATTACTAGCTACCCTTGATGAATATGTTGTTGGTCAAGAACGT
GCAAAACGTGCTCTTGCAGTAGCAGTTTACAATCACTACAAGCGTGTATCTTTTGCTGAAAGTCGTGATGAAGAAGATGT
TGAATTGCAAAAATCAAACATTTTGCTTATCGGACCAACAGGGTCAGGGAAAACTTTCCTTGCTCAAACATTGGCTAAAA
GTCTTAATGTTCCATTTGCGATTGCAGATGCGACATCATTGACTGAAGCAGGATATGTCGGTGAAGACGTTGAAAATATC
CTTTTGAAACTGATTCAAGCAGCTGATTTTAATATTGAACGTGCTGAACGTGGTATTATCTACGTCGATGAAATTGATAA
AATCGCCAAAAAAGGTGAAAATGTTTCAATTACTCGTGACGTTTCAGGTGAGGGTGTTCAACAAGCTCTCCTTAAAATCA
TTGAAGGAACTGTTGCTAGCGTACCACCACAAGGTGGACGTAAACACCCTAACCAAGAAATGATTCAAATTGATACCAAG
AATATCCTTTTCATCGTTGGTGGTGCGTTTGATGGTATCGAAGATATTGTTAAACAACGTCTTGGTGAAAAAATTATTGG
TTTTGGTCAAAATAACCGTAAAATTGATGAAGATGCATCTTATATGCAAGAAATCATCTCAGAAGATATTCAAAAATTTG
GTCTTATTCCAGAGTTTATCGGACGCTTGCCTGTAGTAGCTGCGCTTGAACAATTGACTGCGGATGATTTGGTTCGTATC
TTGACTGAACCTCGCAATGCCTTGGTTAAACAATACCAAACATTGCTATCTTATGATGGTGTTGAGTTGGAATTTGATGA
AGATGCTCTTCAAGCAATTGCTAATAAAGCTATCGAACGTAAGACAGGTGCGCGTGGACTTCGTTCAATTATTGAAGAAA
CAATGATGGATATCATGTTTGAAATTCCTAGTCGCGAAGAAGTTACCAAAGTTCGCATCACTAAAGATGCTGTCGAAGGT
ACTGATAAACCTATCTTAGAAACTGCATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	90.22	100	0.902
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.853	98.044	0.577