Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EL076_RS07885 Genome accession   NZ_LR134275
Coordinates   1569197..1570231 (-) Length   344 a.a.
NCBI ID   WP_371748832.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1564197..1575231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS07860 (NCTC12167_01545) ilvD 1564468..1566186 (-) 1719 WP_002891655.1 dihydroxy-acid dehydratase -
  EL076_RS07865 (NCTC12167_01546) - 1566299..1567480 (+) 1182 WP_126429954.1 NAD(P)/FAD-dependent oxidoreductase -
  EL076_RS07875 (NCTC12167_01548) trmB 1567697..1568338 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EL076_RS07880 (NCTC12167_01549) ccrZ 1568348..1569139 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  EL076_RS07885 (NCTC12167_01550) pptB 1569197..1570231 (-) 1035 WP_371748832.1 ABC transporter permease Regulator
  EL076_RS07890 (NCTC12167_01551) pptA 1570231..1570962 (-) 732 WP_003096306.1 ABC transporter ATP-binding protein Regulator
  EL076_RS07895 (NCTC12167_01552) - 1571027..1571446 (+) 420 WP_003096304.1 HIT family protein -
  EL076_RS07900 (NCTC12167_01553) - 1571443..1571742 (+) 300 WP_003096302.1 hypothetical protein -
  EL076_RS07905 (NCTC12167_01554) - 1571774..1572550 (-) 777 WP_003096299.1 FxLYD domain-containing protein -
  EL076_RS07910 (NCTC12167_01555) - 1572649..1572891 (-) 243 WP_003096296.1 hypothetical protein -
  EL076_RS07915 (NCTC12167_01556) - 1572929..1573273 (-) 345 WP_003096294.1 hypothetical protein -
  EL076_RS07920 (NCTC12167_01557) - 1573292..1573843 (-) 552 WP_126429956.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39917.36 Da        Isoelectric Point: 10.5986

>NTDB_id=1119904 EL076_RS07885 WP_371748832.1 1569197..1570231(-) (pptB) [Streptococcus vestibularis strain NCTC12167]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQSG
LNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAICLFDLKFS
LILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1119904 EL076_RS07885 WP_371748832.1 1569197..1570231(-) (pptB) [Streptococcus vestibularis strain NCTC12167]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTCTTTAATGATCA
CTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTATTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGAATC
CGTGGGCAATCATTCTTGGTTTGCTAGTGCTTTGTCTTCTATTGCCTTTCTGGGGGAATATTGCGACTTATTTAGAGCCA
GCTGATAAGCATTACCTTTTGGTGAAGGAAGAAGAGGTGTTAGACCATGTTAAGAAGGCAACAGGGCGTGCTTTTAGATT
TTGGGTAATCGTACAAAGCCTGATTTTTATTTTGGTTATTCCGCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTCATTTTTCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGA
CTGAATTGGACTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAATGT
TAAAGGGATTACGTCGAGTGTTAAACGCCGTGCTTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAACATA
CTTGGTACAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGGGATTACTTTGCCCTTAGTTTACGCCTGTTTGCCCTAACA
CTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGTTGGCTATGGTGCTTGTGGTTGTTTTTGATTACCTCTTGCTCTTTCA
GCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTAAGCA
ATCTTAAGCGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTATTTGTCTCTTCGACCTTAAGTTTAGC
CTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

97.384

100

0.974

  pptB Streptococcus thermophilus LMD-9

93.314

100

0.933


Multiple sequence alignment