Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EL076_RS03065 Genome accession   NZ_LR134275
Coordinates   602310..603536 (+) Length   408 a.a.
NCBI ID   WP_003093395.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 597310..608536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS03040 (NCTC12167_00608) - 597884..599155 (-) 1272 WP_003094754.1 hydroxymethylglutaryl-CoA reductase, degradative -
  EL076_RS03045 (NCTC12167_00609) - 599148..600323 (-) 1176 WP_003094162.1 hydroxymethylglutaryl-CoA synthase -
  EL076_RS03050 (NCTC12167_00610) - 600646..601506 (+) 861 WP_003093490.1 thymidylate synthase -
  EL076_RS03055 (NCTC12167_00611) - 601614..602117 (+) 504 WP_003093756.1 dihydrofolate reductase -
  EL076_RS03060 (NCTC12167_00612) - 602122..602292 (+) 171 WP_002886174.1 hypothetical protein -
  EL076_RS03065 (NCTC12167_00613) clpX 602310..603536 (+) 1227 WP_003093395.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EL076_RS03070 (NCTC12167_00614) yihA 603546..604145 (+) 600 WP_126429202.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EL076_RS03075 (NCTC12167_00615) - 604273..605649 (+) 1377 WP_003094138.1 amino acid permease -
  EL076_RS03080 (NCTC12167_00616) mmuM 605661..606611 (+) 951 WP_126429204.1 homocysteine S-methyltransferase -
  EL076_RS03085 (NCTC12167_00617) - 606724..606978 (+) 255 WP_003094650.1 DUF1912 family protein -
  EL076_RS03090 (NCTC12167_00618) - 607053..607403 (+) 351 WP_048787980.1 helix-hairpin-helix domain-containing protein -
  EL076_RS03095 (NCTC12167_00619) plsY 607521..608162 (-) 642 WP_126429206.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45051.37 Da        Isoelectric Point: 4.3518

>NTDB_id=1119881 EL076_RS03065 WP_003093395.1 602310..603536(+) (clpX) [Streptococcus vestibularis strain NCTC12167]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGVFICNECVALSQEIIREEMAEEVLADLAETPKPKELLDILNNYVVGQDRA
KRALSVAVYNHYKRINFTESREENDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRIL
TEPRNALVRQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSQEDVTKVRITKEAVDGT
AAPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1119881 EL076_RS03065 WP_003093395.1 602310..603536(+) (clpX) [Streptococcus vestibularis strain NCTC12167]
ATGGCTGGAAATCGTAATGAAGAAATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAAGAAGTAAAGAAAATTATCGC
TGGGAATGGCGTCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAATGGCAGAAGAAGTTT
TGGCTGACTTGGCTGAAACACCAAAGCCAAAAGAACTTTTAGATATTTTAAACAACTATGTCGTGGGGCAGGACCGTGCC
AAACGTGCCTTGTCGGTAGCTGTTTACAATCACTATAAACGTATCAATTTCACAGAAAGTCGTGAAGAGAATGATGTGGA
TTTGCAAAAATCAAATATTCTCATGATTGGACCAACTGGTTCAGGGAAGACTTTCTTGGCTCAGACCTTGGCTCGTAGCT
TGAATGTTCCATTTGCGATTGCGGATGCAACATCATTGACAGAGGCAGGTTATGTGGGTGAGGATGTGGAAAATATCCTC
CTCAAACTGATCCAAGCGGCAGACTTCAATATTGAACGTGCGGAACGTGGGATCATCTATGTCGATGAGATTGATAAGAT
TGCTAAAAAGGGTGAAAACGTATCAATCACTCGTGACGTTTCAGGTGAAGGGGTTCAACAAGCTCTCTTGAAGATTATCG
AAGGAACAGTAGCCAGCGTTCCCCCTCAAGGTGGTCGTAAACACCCTAACCAAGAGATGATTCAAATTGATACTAAGAAT
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGTTT
TGGTCAAAATAATAAGGCTATTGATGATGACTCATCATACATGCAAGAAATTGTGGCTGAAGATATTCAAAAATTCGGTC
TTATCCCTGAGTTTATCGGACGTTTGCCAGTCCTTGCAGCCCTTGAACAGTTAACGGTTGACGACTTGGTTCGTATCTTG
ACAGAGCCTAGAAATGCCTTGGTTAGACAGTACCAAACCCTCTTGTCTTATGATGGGGTTGAACTGGAGTTTGACCAGGA
TGCTCTTGAAGCTATTGCAAGTAAGGCGATTGAACGTAAGACTGGTGCTCGTGGGCTTCGCTCTATCATTGAGGAAGTCA
TGATGGATGTCATGTTTGAAATTCCGAGTCAGGAAGATGTGACTAAGGTTCGTATTACCAAAGAAGCCGTTGACGGTACA
GCTGCTCCAGTTTTGGAAACAGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.242

100

0.895
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.357

98.284

0.564

Multiple sequence alignment