Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EL076_RS02370 Genome accession   NZ_LR134275
Coordinates   433010..434788 (+) Length   592 a.a.
NCBI ID   WP_003095558.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 428010..439788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS02350 (NCTC12167_00471) gdhA 428671..430023 (+) 1353 WP_003095495.1 NADP-specific glutamate dehydrogenase -
  EL076_RS02355 (NCTC12167_00472) - 430161..430571 (+) 411 WP_003095646.1 peptide deformylase -
  EL076_RS02360 (NCTC12167_00473) rcrR 430759..431202 (+) 444 WP_003095436.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  EL076_RS02365 (NCTC12167_00474) rcrP 431206..433020 (+) 1815 WP_003095656.1 ABC transporter ATP-binding protein Regulator
  EL076_RS02370 (NCTC12167_00475) rcrQ 433010..434788 (+) 1779 WP_003095558.1 ABC transporter ATP-binding protein Regulator
  EL076_RS02375 - 434945..435130 (+) 186 WP_037621567.1 hypothetical protein -
  EL076_RS02380 (NCTC12167_00476) - 435538..436161 (+) 624 WP_003095383.1 GTP pyrophosphokinase family protein -
  EL076_RS02385 (NCTC12167_00477) - 436163..436840 (+) 678 WP_003095523.1 response regulator transcription factor -
  EL076_RS02390 (NCTC12167_00478) - 436853..438076 (+) 1224 WP_126429091.1 HAMP domain-containing sensor histidine kinase -
  EL076_RS02395 (NCTC12167_00479) pyrH 438294..439031 (+) 738 WP_117646950.1 UMP kinase -
  EL076_RS02400 (NCTC12167_00480) frr 439046..439603 (+) 558 WP_003095421.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65214.31 Da        Isoelectric Point: 5.3492

>NTDB_id=1119878 EL076_RS02370 WP_003095558.1 433010..434788(+) (rcrQ) [Streptococcus vestibularis strain NCTC12167]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYVISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSIL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSSI
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVNTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNANLILVMKD
GNIIEQGNHDELMAAEGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=1119878 EL076_RS02370 WP_003095558.1 433010..434788(+) (rcrQ) [Streptococcus vestibularis strain NCTC12167]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCTGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGTATCACACCTACAAAAATGGGGACGATTCCAGGCATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTTTATATGTTATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACGGTTGCGACGGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTCCCTCTTAATTATTTCGACAGTCATTCTCAAGGAGACACACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAAGGTCTGGGTACTCTAATTACTTCAAGTATTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATTGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGCTTTCAAGGGG
CTTAATGATAAGCTCTATAAATCTATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTCATGGTCTGTCTTGTGGGTGCTATCAAAGTTATTGACGGTAGCTTGACTATTGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCACAACCTCTTTCTCAAATTGCACAAGGAATTACACAACTCCAATCATCCATT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGATCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCTC
TTGCTAAGCCAGGTCAAAAGATTGCGATCGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTCATGAAA
TTCTATAATATTGATCAAGGCCGTATCACCATTGACGGTGTGAATACGAACGACATGAAACGTGAAACCGTTCATGATCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCCAAGGCTGTCGGTGTTCACCACTTCATCACCACACTTCCAAAGGGGTATGATACT
TATTTGGATGACTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCCCTTCTTAAGGATGCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAAGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCATCGCTTATCAACCATTCGAAATGCCAACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCACGATGAGCTCATGGCAGCAGAAGGTTTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(371-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689

Multiple sequence alignment