Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EL076_RS02365 Genome accession   NZ_LR134275
Coordinates   431206..433020 (+) Length   604 a.a.
NCBI ID   WP_003095656.1    Uniprot ID   -
Organism   Streptococcus vestibularis strain NCTC12167     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 426206..438020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS02340 (NCTC12167_00469) - 426394..427155 (-) 762 WP_003095637.1 NUDIX hydrolase -
  EL076_RS02345 (NCTC12167_00470) - 427219..428325 (-) 1107 WP_003095574.1 AAA family ATPase -
  EL076_RS02350 (NCTC12167_00471) gdhA 428671..430023 (+) 1353 WP_003095495.1 NADP-specific glutamate dehydrogenase -
  EL076_RS02355 (NCTC12167_00472) - 430161..430571 (+) 411 WP_003095646.1 peptide deformylase -
  EL076_RS02360 (NCTC12167_00473) rcrR 430759..431202 (+) 444 WP_003095436.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  EL076_RS02365 (NCTC12167_00474) rcrP 431206..433020 (+) 1815 WP_003095656.1 ABC transporter ATP-binding protein Regulator
  EL076_RS02370 (NCTC12167_00475) rcrQ 433010..434788 (+) 1779 WP_003095558.1 ABC transporter ATP-binding protein Regulator
  EL076_RS02375 - 434945..435130 (+) 186 WP_037621567.1 hypothetical protein -
  EL076_RS02380 (NCTC12167_00476) - 435538..436161 (+) 624 WP_003095383.1 GTP pyrophosphokinase family protein -
  EL076_RS02385 (NCTC12167_00477) - 436163..436840 (+) 678 WP_003095523.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67081.77 Da        Isoelectric Point: 6.1418

>NTDB_id=1119877 EL076_RS02365 WP_003095656.1 431206..433020(+) (rcrP) [Streptococcus vestibularis strain NCTC12167]
MFKIFKRLTTKELIMIVLAVIFVCLNVYLNLKIPDYMSDITILLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMENKVHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKPKEVGTVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDSKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAITRALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDLTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1119877 EL076_RS02365 WP_003095656.1 431206..433020(+) (rcrP) [Streptococcus vestibularis strain NCTC12167]
ATGTTTAAAATCTTTAAACGTTTAACGACAAAAGAGTTAATCATGATTGTCTTAGCGGTGATTTTTGTTTGCTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGATATTACGATACTCTTATCAACTAAGGGAACTAAGGCGTCGGATA
TTTTTGCCTGGAATACAGATGCCCCAGGGATGCGAATGCTTTTAATGTCATTTGCAGGCTTTATGGCTTCTGTAGTGGTT
GGTTTTCTAGCTGCCAGAACAGCAGCAAGTTTTACTACTCGTCTTCGTGATGATATCTTTCATCAGGTTCTAGATTTTTC
GGATGCCGAGATTAAGAAATTCTCTATTCCTAGTCTTTTGACCCGTACGACAAACGATATTACACAATTACAGATGGTAC
TGACCATGGGGTTACAGGTTATTACACAGGGACCTATTATGGCAATCTGGGCTATTACAAAGATTGCTGATAAAAATGGG
AATTGGCTTCTTGCCTTGCTTGTGGCTGTGGCAGTAATTGCCATTCTCATGCTCTTCCTCTTGATTATGGTCATGCCTAA
GCAACGTTTGATTCAAACTCTGACAGATAAACTTAATAGCGTAACGCGTGAATCTCTTACTGGGATTCGTGTGGTGCGTG
CCTATAACGCTGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAATCTCTTTATCGGT
CGTTCTTTTGCCTTACTGACACCGGTGATGACTGCTGTATCTAGTGGTTTGACACTGGCTATTTATTGGATTGGTGCGCA
TCTAATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGCCATGGAAAACAAGGTCCATCTCTTCTCAG
ACATGGTGGTTTACTCATCTTACGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTCGTTTTCTTCCTTCTTCCA
CGTGCAGTTGTAGCAGCTGGTCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAGCCTAAAGAAGTGGGTACTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGTGACACGGTGGCCTTTATTGGTTCGACTGGCTCTGGTAAATCAACACTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACACAAGGAACGATCAAGGTTGACGGTGTCGATGTGCGACATTATGACCATGAAAC
CTTGCATAATATAGTCGGTTATATTCCACAGAAGGCTGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGTAATAACAGTCCCCTTGATGATTCTAAGATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGATTTTGTTGAAAAT
AAAGAAGGTCAACTTAAAGCAGAGGTTGCCCAAGCGGGGTCTAACTTCTCAGGTGGACAGAAACAACGTTTGGCTATTAC
GCGTGCCTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCTTTCTCAGCCTTAGACTATAAGACCGATCGTAAGT
TACGTCAAGAACTGGCTGAAAAAACACAAGATTTGACCAAGTTGATTGTTGCCCAACGCATCTCTACTATTATGGATGCT
GACCAAATCTTGGTTCTTGATCAAGGTAAGGTCGTTGGTCAAGGAACCCACAAGGAACTCTTGGCTAACAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.603

100

0.677

Multiple sequence alignment