Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   EL077_RS07730 Genome accession   NZ_LR134273
Coordinates   1648803..1650125 (-) Length   440 a.a.
NCBI ID   WP_126436994.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain NCTC12091     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1643803..1655125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL077_RS07715 (NCTC12091_01567) - 1646045..1647441 (+) 1397 Protein_1498 ISNCY-like element ISSeq2 family transposase -
  EL077_RS07720 (NCTC12091_01568) hpf 1647539..1648087 (-) 549 WP_014623350.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EL077_RS07725 (NCTC12091_01569) - 1648163..1648744 (-) 582 WP_126437237.1 ComF family protein -
  EL077_RS07730 (NCTC12091_01570) comFA/cflA 1648803..1650125 (-) 1323 WP_126436994.1 DEAD/DEAH box helicase Machinery gene
  EL077_RS07735 (NCTC12091_01571) - 1650181..1650822 (+) 642 WP_126436996.1 YigZ family protein -
  EL077_RS07740 (NCTC12091_01572) cysK 1650943..1651869 (+) 927 WP_126436998.1 cysteine synthase A -
  EL077_RS07745 (NCTC12091_01573) - 1652256..1652618 (-) 363 WP_111692702.1 S1 RNA-binding domain-containing protein -
  EL077_RS07750 (NCTC12091_01574) - 1652618..1654018 (-) 1401 WP_126437001.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  EL077_RS07755 (NCTC12091_01575) - 1654052..1654693 (-) 642 WP_012677497.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 49934.03 Da        Isoelectric Point: 9.6191

>NTDB_id=1119769 EL077_RS07730 WP_126436994.1 1648803..1650125(-) (comFA/cflA) [Streptococcus equi subsp. equi strain NCTC12091]
MENIENYYGRLFPEGKCPKAVSAWACSLQSMITKKGTLYCQRCGSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
APFPKAHYLRWQGQLTTYQAAVSHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVNKGGWVCIASPRVDVCIELEKR
LSRDFSCQVCLMHAESEVYHRSPIIVATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
RDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLEAINRGKLPRRFITLVKKQRATGYPLLIFFPIIELAEQCCQL
LQKYFPKETIAHASSQSSNRMTIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHHLYTSSSLIQISGRVGRSLER
PEGQVLFFHDGISQAMLKAVREIKDMNQKGYQNELSTLPQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=1119769 EL077_RS07730 WP_126436994.1 1648803..1650125(-) (comFA/cflA) [Streptococcus equi subsp. equi strain NCTC12091]
ATGGAGAATATCGAAAATTACTATGGACGCCTTTTCCCTGAAGGGAAATGCCCAAAGGCTGTTTCTGCCTGGGCTTGCAG
CTTACAAAGCATGATCACTAAAAAGGGAACGTTATACTGCCAACGCTGTGGCAGTTTAATTGAGAAGGCTCATCAGCTGC
CTAGCGGTGCTTACTACTGTAGAGCCTGTCTTGTTTTTGGTCGAAACCAATCTGATCGCCCCTTGCTCTATTTTCCACCG
GCTCCTTTTCCAAAGGCACATTATCTGAGGTGGCAAGGACAGCTCACGACATATCAGGCAGCTGTCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACACTGGTTCATGCCGTTACCGGCGCTGGTAAAACAGAGATGATGTATGAAGCCA
TTGCAGCAGTTGTTAATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTCTGCATAGAGCTTGAAAAACGA
CTATCGCGGGACTTTTCCTGTCAAGTCTGCCTTATGCATGCTGAGTCAGAGGTTTATCATAGAAGTCCCATTATCGTTGC
CACAACACATCAATTGATGACCTTTTACCATGCTTTTGATCTGCTCATTATTGACGAAGTAGATGCCTTCCCTTTTGTCA
ATAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AGAGATTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACGTTGGCAAGAAGATTCCATGGCAAGCCCTTAGT
TGTTCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGGCTATCAATCGCGGGAAATTGCCTAGAAGGTTCATCACCCTAG
TCAAAAAACAAAGGGCAACCGGCTATCCTCTTTTAATCTTTTTTCCGATTATTGAGCTGGCTGAGCAATGCTGTCAGCTG
TTGCAAAAGTATTTTCCTAAGGAAACTATTGCTCATGCTTCCAGTCAGTCATCAAATCGAATGACTATCATTGAGCAATT
CAGACAAGGACAAATCACTATACTTATATCAACAACCATTTTGGAAAGAGGTGTGACCTTTCCAACCGTAGATGTCTTTG
TCTTATTAGCCAATCATCACCTTTACACAAGCAGCAGTCTTATTCAAATTTCAGGTCGCGTTGGGCGCTCTTTGGAAAGA
CCTGAAGGACAGGTGCTATTTTTTCATGATGGTATTAGCCAGGCTATGCTTAAGGCAGTGCGGGAGATAAAGGACATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGCCACAATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(98-244)

Helicase conserved C-terminal domain (Helicase_C)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis SK321

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae D39

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae R6

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae Rx1

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae TIGR4

52.941

96.591

0.511
  comFA/cflA Streptococcus mitis NCTC 12261

52.706

96.591

0.509
  comFA Lactococcus lactis subsp. cremoris KW2

48.469

89.091

0.432

Multiple sequence alignment