Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EL077_RS06930 Genome accession   NZ_LR134273
Coordinates   1481694..1482503 (-) Length   269 a.a.
NCBI ID   WP_111692627.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain NCTC12091     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1476694..1487503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL077_RS06920 (NCTC12091_01410) rnc 1478325..1479017 (-) 693 WP_012677641.1 ribonuclease III -
  EL077_RS06925 (NCTC12091_01411) - 1479276..1480790 (-) 1515 WP_159334850.1 helix-turn-helix domain-containing protein -
  EL077_RS06930 (NCTC12091_01412) vicX 1481694..1482503 (-) 810 WP_111692627.1 MBL fold metallo-hydrolase Regulator
  EL077_RS06935 (NCTC12091_01413) vicK 1482507..1483859 (-) 1353 WP_126436911.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL077_RS06940 (NCTC12091_01414) vicR 1483852..1484562 (-) 711 WP_012515994.1 response regulator YycF Regulator
  EL077_RS06945 (NCTC12091_01415) - 1484761..1485780 (-) 1020 WP_126436913.1 DUF3114 domain-containing protein -
  EL077_RS06950 (NCTC12091_01416) - 1485826..1487088 (-) 1263 WP_043052257.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29964.99 Da        Isoelectric Point: 5.5346

>NTDB_id=1119762 EL077_RS06930 WP_111692627.1 1481694..1482503(-) (vicX) [Streptococcus equi subsp. equi strain NCTC12091]
MSEVGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRRPEDLDAILITHEHSDHIKGVGIMARKYNLD
VYANEKTWQMIDERHMIGNLDVAQKHVFERGKTMTFGDIDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRLAG
IIENADGYLIESNHDVEILRAGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGNKTKKIYLGHLSQENNIKELAHMTMVN
QLAMADLGVGTDFTVHDTSPDTASPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1119762 EL077_RS06930 WP_111692627.1 1481694..1482503(-) (vicX) [Streptococcus equi subsp. equi strain NCTC12091]
ATGAGTGAGGTTGGCTTTAAATATAGTATTTTAGCATCAGGATCGACAGGTAACTGCTTTTACTTGGAAACGCCCAAGAA
GCGGTTGTTGATTGATGCAGGACTGACTGGAAAGAAAATCACCAGTCTCCTTGCTGAGATTGACAGAAGGCCTGAGGATT
TGGATGCTATCTTGATTACCCACGAGCATTCCGACCATATCAAGGGTGTTGGAATCATGGCTCGAAAATATAACCTAGAT
GTCTATGCCAATGAAAAGACTTGGCAGATGATTGATGAGCGTCATATGATTGGCAACCTAGACGTCGCACAAAAGCATGT
CTTTGAAAGAGGTAAGACCATGACCTTTGGAGACATTGACATTGAGAGCTTTGGTGTTAGTCATGACGCTGTAGACCCAC
AGTTTTACCGCATTATGAAGGATAACAAGTCCTTTGTCATGCTGACAGATACAGGATATGTGAGTGACCGCTTGGCTGGG
ATCATTGAAAATGCTGACGGCTACTTGATTGAGTCAAATCACGATGTGGAGATATTGCGAGCCGGCTCTTATCCTTGGAG
CCTCAAGCAGCGAATCTTATCTGACCTAGGGCATTTATCCAATGAAGATGGTGCTGGCGCTATGATTCGAAGCTTGGGCA
ATAAAACAAAGAAAATCTACCTCGGTCACCTAAGCCAGGAGAACAATATCAAAGAATTAGCACACATGACAATGGTCAAT
CAGCTAGCAATGGCAGATTTAGGTGTTGGAACAGATTTTACTGTTCATGACACCTCACCAGATACCGCCAGTCCCTTGAC
AGACATCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.093

100

0.751

Multiple sequence alignment