Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL099_RS11515 Genome accession   NZ_LR134271
Coordinates   2212943..2213338 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC7988     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2207943..2218338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL099_RS11490 (NCTC7988_02168) thiE 2208544..2209185 (-) 642 WP_000483160.1 thiamine phosphate synthase -
  EL099_RS11495 (NCTC7988_02169) thiM 2209187..2209978 (-) 792 WP_001108484.1 hydroxyethylthiazole kinase -
  EL099_RS11500 (NCTC7988_02170) thiD 2209962..2210792 (-) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EL099_RS11505 (NCTC7988_02171) tenA 2210785..2211474 (-) 690 WP_000396067.1 thiaminase II -
  EL099_RS11510 (NCTC7988_02173) sceD 2211859..2212554 (-) 696 WP_000751999.1 lytic transglycosylase SceD -
  EL099_RS11515 (NCTC7988_02174) ssb 2212943..2213338 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  EL099_RS11520 (NCTC7988_02175) - 2213532..2213972 (+) 441 WP_000846746.1 YwpF-like family protein -
  EL099_RS11525 (NCTC7988_02176) fabZ 2214029..2214469 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EL099_RS11530 (NCTC7988_02177) murA 2214503..2215768 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EL099_RS11535 (NCTC7988_02178) - 2215879..2216112 (-) 234 WP_000384523.1 DUF1146 family protein -
  EL099_RS11540 (NCTC7988_02179) - 2216733..2217137 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1119726 EL099_RS11515 WP_000932694.1 2212943..2213338(-) (ssb) [Staphylococcus aureus strain NCTC7988]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1119726 EL099_RS11515 WP_000932694.1 2212943..2213338(-) (ssb) [Staphylococcus aureus strain NCTC7988]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment