Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EL082_RS07435 Genome accession   NZ_LR134269
Coordinates   1543945..1544820 (-) Length   291 a.a.
NCBI ID   WP_373364739.1    Uniprot ID   -
Organism   Staphylococcus warneri strain NCTC11044     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1497493..1571442 1543945..1544820 within 0


Gene organization within MGE regions


Location: 1497493..1571442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL082_RS07240 (NCTC11044_01494) - 1497974..1498189 (+) 216 WP_002467042.1 hypothetical protein -
  EL082_RS07245 (NCTC11044_01495) rny 1498311..1499870 (-) 1560 WP_015365062.1 ribonuclease Y -
  EL082_RS07250 (NCTC11044_01496) recA 1500317..1501363 (-) 1047 WP_002451246.1 recombinase RecA Machinery gene
  EL082_RS07255 (NCTC11044_01497) - 1501530..1502681 (-) 1152 WP_002465812.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  EL082_RS07260 (NCTC11044_01498) pgsA 1502854..1503429 (-) 576 WP_103286311.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL082_RS07265 (NCTC11044_01499) - 1503460..1503852 (-) 393 WP_002465806.1 helix-turn-helix domain-containing protein -
  EL082_RS07270 (NCTC11044_01500) - 1503873..1504709 (-) 837 WP_015365064.1 YmfK family protein -
  EL082_RS07275 (NCTC11044_01501) ymfI 1504844..1505548 (-) 705 WP_002465810.1 elongation factor P 5-aminopentanone reductase -
  EL082_RS07280 (NCTC11044_01502) yfmH 1505545..1506834 (-) 1290 WP_015365066.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EL082_RS07285 (NCTC11044_01503) yfmF 1506834..1508120 (-) 1287 WP_037539758.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  EL082_RS07290 (NCTC11044_01504) - 1508133..1508846 (-) 714 WP_049414672.1 GntR family transcriptional regulator -
  EL082_RS12185 - 1508849..1510300 (-) 1452 Protein_1409 DNA translocase FtsK -
  EL082_RS12190 - 1510412..1511245 (-) 834 Protein_1410 cell division protein FtsK -
  EL082_RS07300 (NCTC11044_01506) rnjB 1511485..1513159 (-) 1675 Protein_1411 ribonuclease J2 -
  EL082_RS07310 pnp 1513346..1515445 (-) 2100 WP_002466036.1 polyribonucleotide nucleotidyltransferase -
  EL082_RS07315 (NCTC11044_01509) rpsO 1515581..1515850 (-) 270 WP_002450539.1 30S ribosomal protein S15 -
  EL082_RS07320 (NCTC11044_01510) ribF 1515964..1516935 (-) 972 WP_002466033.1 riboflavin biosynthesis protein RibF -
  EL082_RS07325 (NCTC11044_01511) truB 1516948..1517865 (-) 918 WP_002466042.1 tRNA pseudouridine(55) synthase TruB -
  EL082_RS07330 (NCTC11044_01512) rbfA 1518018..1518368 (-) 351 WP_002466047.1 30S ribosome-binding factor RbfA -
  EL082_RS07335 (NCTC11044_01513) infB 1518508..1520673 (-) 2166 WP_015365072.1 translation initiation factor IF-2 -
  EL082_RS07340 (NCTC11044_01514) - 1520678..1520995 (-) 318 WP_002466040.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  EL082_RS07345 (NCTC11044_01515) rnpM 1520992..1521279 (-) 288 WP_002450545.1 RNase P modulator RnpM -
  EL082_RS07350 (NCTC11044_01516) nusA 1521299..1522531 (-) 1233 WP_015365073.1 transcription termination factor NusA -
  EL082_RS07355 (NCTC11044_01517) rimP 1522552..1523019 (-) 468 WP_015365074.1 ribosome maturation factor RimP -
  EL082_RS07360 (NCTC11044_01518) - 1523202..1527512 (-) 4311 WP_103286318.1 PolC-type DNA polymerase III -
  EL082_RS07365 (NCTC11044_01519) - 1527780..1529483 (-) 1704 WP_049414683.1 proline--tRNA ligase -
  EL082_RS07370 (NCTC11044_01520) rseP 1529503..1530789 (-) 1287 WP_002466035.1 RIP metalloprotease RseP -
  EL082_RS07375 (NCTC11044_01521) - 1531032..1531814 (-) 783 WP_002466065.1 phosphatidate cytidylyltransferase -
  EL082_RS07380 (NCTC11044_01522) - 1531818..1532588 (-) 771 WP_002466060.1 isoprenyl transferase -
  EL082_RS07385 (NCTC11044_01523) frr 1532821..1533375 (-) 555 WP_002450553.1 ribosome recycling factor -
  EL082_RS07390 (NCTC11044_01524) pyrH 1533391..1534113 (-) 723 WP_002450554.1 UMP kinase -
  EL082_RS07395 (NCTC11044_01525) tsf 1534254..1535132 (-) 879 WP_049414688.1 translation elongation factor Ts -
  EL082_RS07400 (NCTC11044_01526) rpsB 1535284..1536072 (-) 789 WP_002466032.1 30S ribosomal protein S2 -
  EL082_RS07405 (NCTC11044_01527) codY 1536379..1537152 (-) 774 WP_002450557.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  EL082_RS07410 (NCTC11044_01528) hslU 1537176..1538579 (-) 1404 WP_015365077.1 ATP-dependent protease ATPase subunit HslU -
  EL082_RS07415 (NCTC11044_01529) hslV 1538668..1539213 (-) 546 WP_002450559.1 ATP-dependent protease subunit HslV -
  EL082_RS07420 (NCTC11044_01530) xerC 1539210..1540103 (-) 894 WP_103286312.1 tyrosine recombinase XerC -
  EL082_RS07425 (NCTC11044_01531) trmFO 1540268..1541575 (-) 1308 WP_103286313.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EL082_RS07430 (NCTC11044_01532) topA 1541692..1543767 (-) 2076 WP_180991094.1 type I DNA topoisomerase -
  EL082_RS07435 (NCTC11044_01533) dprA 1543945..1544820 (-) 876 WP_373364739.1 DNA-processing protein DprA Machinery gene
  EL082_RS07440 (NCTC11044_01534) sucD 1545055..1545960 (-) 906 WP_002466045.1 succinate--CoA ligase subunit alpha -
  EL082_RS07445 (NCTC11044_01535) sucC 1545982..1547148 (-) 1167 WP_002466034.1 ADP-forming succinate--CoA ligase subunit beta -
  EL082_RS07450 (NCTC11044_01536) - 1547256..1548026 (-) 771 WP_002466053.1 ribonuclease HII -
  EL082_RS07455 (NCTC11044_01537) ylqF 1548019..1548894 (-) 876 WP_002466050.1 ribosome biogenesis GTPase YlqF -
  EL082_RS07460 (NCTC11044_01538) - 1549194..1551794 (+) 2601 WP_002466048.1 YfhO family protein -
  EL082_RS07465 (NCTC11044_01539) - 1551787..1554396 (+) 2610 WP_019235877.1 YfhO family protein -
  EL082_RS07470 (NCTC11044_01540) rplS 1554562..1554912 (-) 351 WP_002450570.1 50S ribosomal protein L19 -
  EL082_RS07475 (NCTC11044_01541) trmD 1555018..1555755 (-) 738 WP_002466037.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  EL082_RS07480 (NCTC11044_01542) rimM 1555755..1556258 (-) 504 WP_002466057.1 ribosome maturation factor RimM -
  EL082_RS07485 (NCTC11044_01543) rpsP 1556426..1556701 (-) 276 WP_002466054.1 30S ribosomal protein S16 -
  EL082_RS07490 (NCTC11044_01544) ffh 1557233..1558600 (-) 1368 WP_002450574.1 signal recognition particle protein -
  EL082_RS07495 (NCTC11044_01545) - 1558625..1558957 (-) 333 WP_002466066.1 putative DNA-binding protein -
  EL082_RS07500 (NCTC11044_01546) ftsY 1558944..1560188 (-) 1245 WP_002466030.1 signal recognition particle-docking protein FtsY -
  EL082_RS07505 (NCTC11044_01547) smc 1560185..1563754 (-) 3570 WP_015365084.1 chromosome segregation protein SMC -
  EL082_RS07510 (NCTC11044_01548) rnc 1563907..1564635 (-) 729 WP_015365085.1 ribonuclease III -
  EL082_RS07515 (NCTC11044_01549) - 1564746..1564979 (-) 234 WP_001830184.1 acyl carrier protein -
  EL082_RS07520 (NCTC11044_01550) fabG 1565192..1565926 (-) 735 WP_015365086.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  EL082_RS07525 (NCTC11044_01551) fabD 1565926..1566846 (-) 921 WP_002466912.1 ACP S-malonyltransferase -
  EL082_RS07530 (NCTC11044_01552) plsX 1566839..1567825 (-) 987 WP_015365088.1 phosphate acyltransferase PlsX -
  EL082_RS07535 (NCTC11044_01553) fapR 1567818..1568387 (-) 570 WP_002466907.1 transcription factor FapR -
  EL082_RS07540 (NCTC11044_01555) recG 1568537..1570584 (-) 2048 Protein_1458 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33923.00 Da        Isoelectric Point: 8.6890

>NTDB_id=1119654 EL082_RS07435 WP_373364739.1 1543945..1544820(-) (dprA) [Staphylococcus warneri strain NCTC11044]
MNLNENFLPKLYWSHFTTSQIHQFYRYNPHIFQMTSNEQEISLLYWITQHHPTLLSKFHKYKQINIVEIMKILRQLHVKY
ITFFDEDYPYLLKEIYDYPFVLFYKGDKKLFLSNQTLAIVGARKCSNYTQEALQYLFPSFKEKNITIISGLAEGADSEAH
IQALKIDLSTIAVLGFGHHYYYPRNLVSLRKNIEEKGLVISEYPPFSPIAKYKFPERNRIISGLSKGVLLTESNERSGSR
ITVDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGASMVVSAEDILQDYLN

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1119654 EL082_RS07435 WP_373364739.1 1543945..1544820(-) (dprA) [Staphylococcus warneri strain NCTC11044]
ATGAATTTGAACGAAAACTTTTTACCTAAATTATACTGGTCACATTTTACAACCTCACAAATCCATCAATTTTATCGGTA
CAACCCTCATATTTTCCAAATGACTTCTAATGAACAAGAAATTTCATTATTATATTGGATTACTCAACATCATCCTACGC
TTTTATCAAAATTTCATAAATATAAACAAATAAATATAGTAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATAT
ATCACTTTTTTCGACGAAGATTATCCTTATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAGGGAGA
TAAGAAATTATTTTTAAGTAATCAAACTTTGGCAATTGTTGGTGCTAGGAAATGTTCAAATTATACGCAAGAAGCACTAC
AATATCTTTTTCCTTCATTTAAAGAAAAAAATATTACGATTATTTCTGGGTTAGCAGAAGGTGCCGATAGTGAAGCACAC
ATACAAGCCTTGAAAATCGATTTATCAACCATTGCAGTATTAGGGTTTGGTCACCATTATTATTATCCTAGAAACTTAGT
TTCATTAAGAAAAAATATTGAAGAAAAGGGGTTAGTTATTTCGGAGTACCCACCATTTTCGCCAATTGCTAAGTATAAGT
TTCCAGAAAGAAATAGGATTATTAGTGGATTATCAAAAGGTGTATTATTAACTGAATCAAATGAAAGAAGTGGTAGCAGA
ATCACAGTTGATTGTGCATTAGAACAAAATAGAAATGTGTATGTTTTACCGGGTAAATTATTTGATTCAAAAACAAAAGG
AAATCTATTATTGCATCAAGAAGGAGCTTCTATGGTCGTTAGTGCTGAAGACATTTTACAAGACTATTTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

55.634

97.595

0.543
  dprA Staphylococcus aureus MW2

55.634

97.595

0.543

Multiple sequence alignment