Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL082_RS03830 Genome accession   NZ_LR134269
Coordinates   791835..792218 (+) Length   127 a.a.
NCBI ID   WP_002466750.1    Uniprot ID   -
Organism   Staphylococcus warneri strain NCTC11044     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 790947..791204 791835..792218 flank 631


Gene organization within MGE regions


Location: 790947..792218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL082_RS03825 (NCTC11044_00784) - 791207..791647 (-) 441 WP_002466783.1 YwpF-like family protein -
  EL082_RS03830 (NCTC11044_00785) ssb 791835..792218 (+) 384 WP_002466750.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14533.42 Da        Isoelectric Point: 6.4556

>NTDB_id=1119638 EL082_RS03830 WP_002466750.1 791835..792218(+) (ssb) [Staphylococcus warneri strain NCTC11044]
MLNKIVLVGRLTKDAQIFEKEEGSKVATFCVATERNYKDQNNEIACDYLYCKAFGKTATNIEMYTSQGSLVGITGQMRSR
KYEKDNQTHFVTEVYVETIKFMSSKTKESNILSNEFNEAQNECFHIG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1119638 EL082_RS03830 WP_002466750.1 791835..792218(+) (ssb) [Staphylococcus warneri strain NCTC11044]
ATGTTAAATAAAATAGTTTTAGTTGGCAGACTTACAAAGGATGCCCAAATTTTTGAAAAGGAGGAAGGTAGTAAAGTAGC
AACATTTTGCGTTGCTACGGAAAGAAATTATAAAGATCAGAACAATGAAATCGCATGCGATTACCTATATTGTAAAGCTT
TTGGTAAAACAGCTACGAATATCGAAATGTATACATCACAGGGTTCTTTAGTGGGTATTACAGGTCAAATGCGATCTCGT
AAGTATGAAAAAGATAATCAGACACATTTTGTAACTGAAGTATATGTAGAAACAATTAAATTTATGTCCTCTAAGACAAA
AGAATCCAATATCCTCTCTAACGAATTTAATGAAGCACAAAATGAATGCTTTCATATAGGTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

78.07

89.764

0.701
  ssb Staphylococcus aureus MW2

77.193

89.764

0.693

Multiple sequence alignment