Detailed information NTG1119505

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: EL071_RS04605
• Genome accession: NZ_LR134265
• Coordinates: 852925..853857 (+)
• Length: 310 a.a.
• NCBI ID: WP_115357044.1
• Uniprot ID: A0AB38VJY9
• Organism: Streptococcus agalactiae strain NCTC8184
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 847925..858857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL071_RS04585 (NCTC8184_00893)	-	848133..849791 (+)	1659	WP_129544859.1	peptide ABC transporter substrate-binding protein	-
EL071_RS04590 (NCTC8184_00894)	-	849911..850825 (+)	915	WP_000598967.1	ABC transporter permease	-
EL071_RS04595 (NCTC8184_00895)	-	850835..851866 (+)	1032	WP_000764053.1	ABC transporter permease	-
EL071_RS04600 (NCTC8184_00896)	oppD	851879..852928 (+)	1050	WP_000410287.1	ABC transporter ATP-binding protein	Regulator
EL071_RS04605 (NCTC8184_00897)	amiF	852925..853857 (+)	933	WP_115357044.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 34855.71 Da
• Isoelectric Point: 6.8963

>NTDB_id=1119505 EL071_RS04605 WP_115357044.1 852925..853857(+) (amiF) [Streptococcus agalactiae strain NCTC8184]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTVGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVDPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNKPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPGHFVLSTPQEAEEYKKQIL

Nucleotide

• Length: 933 bp

>NTDB_id=1119505 EL071_RS04605 WP_115357044.1 852925..853857(+) (amiF) [Streptococcus agalactiae strain NCTC8184]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGTGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CCGTTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGCGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGACATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGACAACGACAA
CGTATCGGGATTGCACGTGCTTTAGCAGTAGATCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTTAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGAAAACTGTTAGAAGTTGGAACATCTGATGAT
GTTTATAACAAACCAATCCACCCTTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACACCTGGTCATT
TTGTTTTATCTACACCCCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-267)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.355	0.539
amiF	Streptococcus thermophilus LMG 18311	53.896	99.355	0.535
amiF	Streptococcus salivarius strain HSISS4	54.098	98.387	0.532