Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   EL071_RS04600 Genome accession   NZ_LR134265
Coordinates   851879..852928 (+) Length   349 a.a.
NCBI ID   WP_000410287.1    Uniprot ID   A0AB38VMS2
Organism   Streptococcus agalactiae strain NCTC8184     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 846879..857928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL071_RS04585 (NCTC8184_00893) - 848133..849791 (+) 1659 WP_129544859.1 peptide ABC transporter substrate-binding protein -
  EL071_RS04590 (NCTC8184_00894) - 849911..850825 (+) 915 WP_000598967.1 ABC transporter permease -
  EL071_RS04595 (NCTC8184_00895) - 850835..851866 (+) 1032 WP_000764053.1 ABC transporter permease -
  EL071_RS04600 (NCTC8184_00896) oppD 851879..852928 (+) 1050 WP_000410287.1 ABC transporter ATP-binding protein Regulator
  EL071_RS04605 (NCTC8184_00897) amiF 852925..853857 (+) 933 WP_115357044.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38872.35 Da        Isoelectric Point: 4.7644

>NTDB_id=1119504 EL071_RS04600 WP_000410287.1 851879..852928(+) (oppD) [Streptococcus agalactiae strain NCTC8184]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKAQ

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1119504 EL071_RS04600 WP_000410287.1 851879..852928(+) (oppD) [Streptococcus agalactiae strain NCTC8184]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGAATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGCGGGAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGTATGCAAATAGCGGAGCCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAACGATTACCCACATCAGTGGTCTGGAGGAATG
CGTCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTAAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATCGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCCAATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.963

99.427

0.785
  amiE Streptococcus salivarius strain HSISS4

55.162

97.135

0.536
  amiE Streptococcus thermophilus LMG 18311

54.572

97.135

0.53
  amiE Streptococcus thermophilus LMD-9

54.572

97.135

0.53

Multiple sequence alignment