Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   EL101_RS04140 Genome accession   NZ_LR134263
Coordinates   918981..919697 (-) Length   238 a.a.
NCBI ID   WP_019166403.1    Uniprot ID   -
Organism   Staphylococcus delphini strain NCTC12225     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 913981..924697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL101_RS04120 (NCTC12225_00854) - 914167..915252 (-) 1086 WP_096598729.1 YeeE/YedE family protein -
  EL101_RS04125 (NCTC12225_00855) - 915486..916433 (+) 948 WP_096598727.1 LacI family DNA-binding transcriptional regulator -
  EL101_RS04130 (NCTC12225_00856) - 916489..917976 (+) 1488 WP_096598725.1 sucrose-6-phosphate hydrolase -
  EL101_RS04135 (NCTC12225_00857) - 917977..918921 (+) 945 WP_096598723.1 carbohydrate kinase -
  EL101_RS04140 (NCTC12225_00858) agrA 918981..919697 (-) 717 WP_019166403.1 LytTR family DNA-binding domain-containing protein Regulator
  EL101_RS04145 (NCTC12225_00859) - 919711..920427 (-) 717 Protein_821 ATP-binding protein -
  EL101_RS04150 (NCTC12225_00860) istB 920492..921259 (-) 768 WP_096596554.1 IS21-like element helper ATPase IstB -
  EL101_RS04155 (NCTC12225_00861) istA 921271..922467 (-) 1197 WP_241971460.1 IS21 family transposase -
  EL101_RS04165 (NCTC12225_00863) - 923230..923367 (-) 138 WP_096597589.1 cyclic lactone autoinducer peptide -
  EL101_RS04170 (NCTC12225_00864) - 923369..923935 (-) 567 WP_096542351.1 accessory gene regulator AgrB -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28072.20 Da        Isoelectric Point: 5.2431

>NTDB_id=1119433 EL101_RS04140 WP_019166403.1 918981..919697(-) (agrA) [Staphylococcus delphini strain NCTC12225]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITRVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1119433 EL101_RS04140 WP_019166403.1 918981..919697(-) (agrA) [Staphylococcus delphini strain NCTC12225]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGCATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGGAAATTGAGCTTGCTACTAATGACCCTTACGCTATTTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAATGGGATTAAATTAGGGAGCGAAATTCGTAAACACGACCCT
GTCGGGAATATTATTTTTGTGACGAGTCATAGTGAACTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGAACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGGACGAGCTCGGTTTACGTGAACTATGATGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAGTTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGACCGGTTCTTCAGATGTCACAACAGTTATGTGCTGAATAGAAGGAATATAACGCGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTCTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832

Multiple sequence alignment