Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   EL068_RS08575 Genome accession   NZ_LR134242
Coordinates   1786304..1786873 (-) Length   189 a.a.
NCBI ID   WP_002465629.1    Uniprot ID   A0A2J6P1Z9
Organism   Staphylococcus warneri strain NCTC4133     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1781304..1791873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL068_RS08545 (NCTC4133_01744) - 1782299..1783237 (+) 939 WP_002465619.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EL068_RS08550 (NCTC4133_01745) - 1783292..1783846 (-) 555 WP_015365209.1 GNAT family N-acetyltransferase -
  EL068_RS08555 (NCTC4133_01746) - 1784050..1784262 (+) 213 WP_126510431.1 TM2 domain-containing protein -
  EL068_RS11860 (NCTC4133_01747) - 1784363..1784464 (+) 102 WP_019235857.1 SAR1012 family small protein -
  EL068_RS08560 (NCTC4133_01748) - 1784688..1785044 (+) 357 WP_126510432.1 DoxX family protein -
  EL068_RS08575 (NCTC4133_01751) comK/comK1 1786304..1786873 (-) 570 WP_002465629.1 competence protein ComK Regulator
  EL068_RS08580 (NCTC4133_01752) - 1787092..1787310 (+) 219 WP_002465640.1 IDEAL domain-containing protein -
  EL068_RS08585 (NCTC4133_01753) - 1787390..1788376 (-) 987 WP_126510433.1 lipoate--protein ligase -
  EL068_RS08590 (NCTC4133_01754) - 1788581..1788766 (+) 186 WP_002450747.1 YkvS family protein -
  EL068_RS08595 (NCTC4133_01755) - 1788772..1789374 (+) 603 WP_002465620.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  EL068_RS08600 (NCTC4133_01756) - 1789530..1791038 (-) 1509 WP_126510434.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22438.69 Da        Isoelectric Point: 9.6661

>NTDB_id=1119341 EL068_RS08575 WP_002465629.1 1786304..1786873(-) (comK/comK1) [Staphylococcus warneri strain NCTC4133]
MTTQNIYVIRKGDMVIRPNYDNQNQPNGSEIIRFDKTVIQSPFKVQKIIERSCKFYGNNYLSKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQEENLWINMHYVESIKELKHRKCKIIFANNETITLNVSFHSLWHQYTNAIFFYYMVDKQSRMKS
NDPDKPIDYEKSSLNIFEALSRYSLFVDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1119341 EL068_RS08575 WP_002465629.1 1786304..1786873(-) (comK/comK1) [Staphylococcus warneri strain NCTC4133]
ATGACAACTCAGAATATTTACGTAATTAGAAAGGGAGACATGGTGATTAGGCCTAATTATGATAATCAAAATCAACCAAA
TGGTTCAGAAATTATTCGGTTTGATAAGACAGTCATACAAAGCCCATTTAAAGTTCAAAAGATTATAGAGAGATCATGCA
AATTTTATGGTAACAATTATTTAAGTAAAAAAGCTGAAACCAATCGAATCACAGGTATCTCAAGTAAACCTCCAATTTTA
TTAACTCCTTTATTTCCAACTTACTTTTTTCCTACTCATTCAGATCGACAAGAAGAAAATTTATGGATTAATATGCATTA
TGTTGAATCTATTAAAGAATTAAAACATCGTAAATGTAAAATCATATTTGCAAACAATGAAACCATTACCCTTAATGTAT
CATTCCACAGTTTATGGCATCAGTATACCAACGCAATCTTCTTTTATTATATGGTAGATAAACAATCCCGCATGAAATCT
AATGACCCCGATAAACCCATCGATTATGAAAAATCCTCATTAAACATTTTTGAAGCATTATCACGTTATTCGCTATTTGT
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6P1Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

80.423

100

0.804
  comK/comK1 Staphylococcus aureus N315

80.423

100

0.804

Multiple sequence alignment