Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL083_RS12260 Genome accession   NZ_LR134215
Coordinates   2532554..2533183 (-) Length   209 a.a.
NCBI ID   WP_002439606.1    Uniprot ID   -
Organism   Shimwellia blattae strain NCTC12127     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2527554..2538183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL083_RS12245 (NCTC12127_02462) helD 2527796..2529850 (-) 2055 WP_002439612.1 DNA helicase IV -
  EL083_RS12250 (NCTC12127_02463) - 2529973..2530419 (+) 447 WP_002439611.1 YccF domain-containing protein -
  EL083_RS12255 (NCTC12127_02464) yccS 2530438..2532564 (+) 2127 WP_002439608.1 YccS family putative transporter -
  EL083_RS12260 (NCTC12127_02465) sxy/tfoX 2532554..2533183 (-) 630 WP_002439606.1 TfoX/Sxy family DNA transformation protein Regulator
  EL083_RS12265 (NCTC12127_02466) sulA 2533403..2533915 (+) 513 WP_002439604.1 SOS-induced cell division inhibitor SulA -
  EL083_RS12270 (NCTC12127_02467) ompA 2534275..2535342 (+) 1068 WP_002439603.1 porin OmpA -
  EL083_RS12275 (NCTC12127_02468) matP 2535434..2535886 (-) 453 WP_002439602.1 macrodomain Ter protein MatP -
  EL083_RS12280 (NCTC12127_02470) - 2536101..2537861 (+) 1761 WP_002439601.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23990.70 Da        Isoelectric Point: 9.3445

>NTDB_id=1119090 EL083_RS12260 WP_002439606.1 2532554..2533183(-) (sxy/tfoX) [Shimwellia blattae strain NCTC12127]
MKKASLERIRASREYLSELGEIKHRALFGGYSLFVDNTVFAMVAEGELYLRACEQAATYVSRREPGMLSIHKRGRAVALQ
YYHVDDELWEDKHQLLTLSRESLRCAQDEKQSRKAAQRLKDLPNLSLRIEMLLQDVGVDDVNTLIHLGARACWIKLRKVH
PFIGINILYALEGAIRGVHLAALPAARRRELQEWWLALQRDRSGNLSID

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1119090 EL083_RS12260 WP_002439606.1 2532554..2533183(-) (sxy/tfoX) [Shimwellia blattae strain NCTC12127]
ATGAAAAAAGCATCGCTTGAGCGGATCCGGGCATCCCGAGAATACTTGTCAGAACTTGGGGAAATTAAGCACCGGGCGCT
GTTTGGCGGGTACAGTCTGTTTGTGGACAACACCGTGTTCGCCATGGTGGCAGAAGGGGAGCTGTATCTGCGCGCCTGCG
AGCAGGCCGCAACCTACGTGAGCCGCCGGGAACCCGGGATGCTTTCGATCCATAAACGGGGCCGGGCGGTGGCCTTACAA
TACTACCACGTTGATGATGAGCTCTGGGAAGACAAGCACCAGCTGTTAACCCTTTCCCGCGAGTCACTGCGCTGTGCGCA
GGATGAAAAGCAAAGCCGCAAGGCAGCGCAGCGCCTGAAAGATCTGCCTAACTTATCGCTGAGAATTGAAATGCTGTTGC
AGGACGTGGGGGTCGATGACGTTAACACCCTGATCCATCTGGGGGCCCGGGCATGCTGGATAAAATTGCGCAAAGTGCAT
CCGTTTATCGGCATTAATATTCTGTATGCCCTGGAGGGCGCCATTCGCGGGGTGCACCTGGCGGCGCTCCCGGCGGCGCG
TCGCCGGGAGCTACAGGAGTGGTGGCTGGCCTTACAGCGCGACCGTTCAGGCAATCTGTCTATAGATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

53.093

92.823

0.493

Multiple sequence alignment