Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   EL098_RS01120 Genome accession   NZ_LR134201
Coordinates   235396..235872 (-) Length   158 a.a.
NCBI ID   WP_126354311.1    Uniprot ID   -
Organism   Cedecea lapagei strain NCTC11466     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230396..240872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL098_RS01095 (NCTC11466_00219) rpsG 230451..230921 (+) 471 WP_008457106.1 30S ribosomal protein S7 -
  EL098_RS01100 (NCTC11466_00220) fusA 231015..233129 (+) 2115 WP_126354309.1 elongation factor G -
  EL098_RS01105 (NCTC11466_00221) tuf 233201..234385 (+) 1185 WP_038478205.1 elongation factor Tu -
  EL098_RS01110 (NCTC11466_00222) bfd 234608..234802 (+) 195 WP_016538470.1 bacterioferritin-associated ferredoxin -
  EL098_RS01115 (NCTC11466_00223) bfr 234874..235347 (+) 474 WP_126354310.1 bacterioferritin -
  EL098_RS01120 (NCTC11466_00224) pilD 235396..235872 (-) 477 WP_126354311.1 A24 family peptidase Machinery gene
  EL098_RS01125 (NCTC11466_00225) rpsJ 236271..236582 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  EL098_RS01130 (NCTC11466_00226) rplC 236614..237243 (+) 630 WP_016538466.1 50S ribosomal protein L3 -
  EL098_RS01135 (NCTC11466_00227) rplD 237254..237859 (+) 606 WP_008457145.1 50S ribosomal protein L4 -
  EL098_RS01140 (NCTC11466_00228) rplW 237856..238158 (+) 303 WP_008457148.1 50S ribosomal protein L23 -
  EL098_RS01145 (NCTC11466_00229) rplB 238176..238997 (+) 822 WP_008457150.1 50S ribosomal protein L2 -
  EL098_RS01150 (NCTC11466_00230) rpsS 239014..239292 (+) 279 WP_001138115.1 30S ribosomal protein S19 -
  EL098_RS01155 (NCTC11466_00231) rplV 239307..239639 (+) 333 WP_002919773.1 50S ribosomal protein L22 -
  EL098_RS01160 (NCTC11466_00232) rpsC 239657..240355 (+) 699 WP_006817277.1 30S ribosomal protein S3 -
  EL098_RS01165 (NCTC11466_00233) rplP 240368..240778 (+) 411 WP_015962145.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17531.03 Da        Isoelectric Point: 9.4396

>NTDB_id=1118912 EL098_RS01120 WP_126354311.1 235396..235872(-) (pilD) [Cedecea lapagei strain NCTC11466]
MISTSIPLAWLLPAAALYFCFALRLSMIDFRTMLLPDRLTLPLLWLGLLFHSLVSPHHLCHAVYGAVAGYLCLWLVFQLF
KYATGKAGLGYGDFKLLAAIGAWNYWQNLPLVLAIASLLGLVYTGALSLCKRRRSAEVPFGPWLAIAGWGNFAWQMLG

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1118912 EL098_RS01120 WP_126354311.1 235396..235872(-) (pilD) [Cedecea lapagei strain NCTC11466]
ATGATATCGACCAGTATCCCGCTTGCCTGGCTATTACCTGCTGCTGCGCTCTATTTCTGTTTTGCGCTGCGGCTAAGCAT
GATTGATTTCCGCACTATGCTGCTCCCCGACAGGCTCACCCTGCCCCTGCTTTGGCTCGGGCTGCTTTTCCATAGTCTGG
TGAGTCCACATCATCTTTGCCACGCTGTTTACGGCGCCGTTGCTGGCTATCTTTGTCTGTGGCTTGTTTTTCAGCTCTTC
AAGTACGCGACCGGCAAAGCGGGTCTGGGGTATGGTGACTTTAAGCTATTGGCCGCTATTGGCGCCTGGAACTACTGGCA
AAATTTGCCTCTCGTTCTCGCCATCGCTTCGTTACTGGGCCTTGTTTATACCGGAGCGCTTTCTCTGTGCAAACGACGCA
GGAGTGCAGAGGTGCCTTTTGGGCCCTGGCTCGCGATTGCTGGTTGGGGGAATTTTGCCTGGCAGATGTTAGGGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

48.101

100

0.481
  pilD Vibrio campbellii strain DS40M4

50.345

91.772

0.462
  pilD Acinetobacter baumannii D1279779

50.37

85.443

0.43
  pilD Acinetobacter nosocomialis M2

50.37

85.443

0.43
  pilD Neisseria gonorrhoeae MS11

43.972

89.241

0.392

Multiple sequence alignment