Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   T556_RS03150 Genome accession   NZ_CP003974
Coordinates   521634..522107 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae NG-k51.05     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516634..527107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T556_RS03125 (T556_02825) dnaB 517118..518521 (+) 1404 WP_012503477.1 replicative DNA helicase -
  T556_RS15065 - 518515..518627 (-) 113 Protein_517 IS5/IS1182 family transposase -
  T556_RS03130 (T556_02830) pilH 518778..519440 (+) 663 WP_041421240.1 GspH/FimT family pseudopilin Machinery gene
  T556_RS03135 (T556_02835) pilI 519472..520086 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  T556_RS03140 (T556_02840) pilJ 520083..521042 (+) 960 WP_012503480.1 PilW family protein Machinery gene
  T556_RS03145 (T556_02845) pilK 521021..521632 (+) 612 WP_012503481.1 pilus assembly PilX family protein Machinery gene
  T556_RS03150 (T556_02850) pilL 521634..522107 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  T556_RS03155 (T556_02855) - 522177..522485 (-) 309 WP_003706588.1 AzlD family protein -
  T556_RS03160 (T556_02860) - 522482..523193 (-) 712 Protein_524 AzlC family ABC transporter permease -
  T556_RS03165 (T556_02865) dut 523359..523811 (+) 453 WP_003701071.1 dUTP diphosphatase -
  T556_RS03170 (T556_02870) dapC 523883..525070 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  T556_RS03175 (T556_02875) yaaA 525226..526005 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=111889 T556_RS03150 WP_012503482.1 521634..522107(+) (pilL) [Neisseria gonorrhoeae NG-k51.05]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=111889 T556_RS03150 WP_012503482.1 521634..522107(+) (pilL) [Neisseria gonorrhoeae NG-k51.05]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854

Multiple sequence alignment