Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   EL036_RS08005 Genome accession   NZ_LR134193
Coordinates   1616289..1616786 (-) Length   165 a.a.
NCBI ID   WP_029697681.1    Uniprot ID   A0AAE2ZZ83
Organism   Staphylococcus aureus strain NCTC13616     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1611289..1621786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL036_RS07980 (NCTC13616_01538) gcvPB 1611451..1612923 (-) 1473 WP_000202190.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  EL036_RS07985 (NCTC13616_01539) gcvPA 1612916..1614262 (-) 1347 WP_000019688.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  EL036_RS07990 (NCTC13616_01540) gcvT 1614282..1615373 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  EL036_RS07995 - 1615532..1616056 (-) 525 WP_001015122.1 shikimate kinase -
  EL036_RS08000 - 1616046..1616192 (-) 147 WP_001789879.1 hypothetical protein -
  EL036_RS08005 (NCTC13616_01542) comGF 1616289..1616786 (-) 498 WP_029697681.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL036_RS08010 (NCTC13616_01543) comGE 1616704..1617003 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  EL036_RS08015 (NCTC13616_01544) comGD 1616990..1617436 (-) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL036_RS08020 (NCTC13616_01545) comGC 1617414..1617725 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  EL036_RS08025 (NCTC13616_01546) comGB 1617739..1618809 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL036_RS08030 (NCTC13616_01547) comGA 1618781..1619755 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  EL036_RS08035 (NCTC13616_01548) - 1619807..1620430 (-) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  EL036_RS08040 (NCTC13616_01549) - 1620427..1620756 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  EL036_RS08045 (NCTC13616_01550) - 1620761..1621741 (-) 981 WP_126497603.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19211.94 Da        Isoelectric Point: 10.2436

>NTDB_id=1118841 EL036_RS08005 WP_029697681.1 1616289..1616786(-) (comGF) [Staphylococcus aureus strain NCTC13616]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFRGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1118841 EL036_RS08005 WP_029697681.1 1616289..1616786(-) (comGF) [Staphylococcus aureus strain NCTC13616]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAGAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(69-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

97.576

100

0.976

Multiple sequence alignment