Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   EL064_RS13495 Genome accession   NZ_LR134178
Coordinates   3119409..3120068 (-) Length   219 a.a.
NCBI ID   WP_128130190.1    Uniprot ID   -
Organism   Legionella sainthelensi strain NCTC12450     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3114409..3125068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL064_RS13480 (NCTC12450_02839) - 3115895..3116461 (-) 567 WP_027272041.1 hypothetical protein -
  EL064_RS13485 (NCTC12450_02840) - 3116470..3117183 (-) 714 WP_128130189.1 L,D-transpeptidase -
  EL064_RS13490 (NCTC12450_02841) uvrC 3117420..3119291 (-) 1872 WP_115705645.1 excinuclease ABC subunit UvrC -
  EL064_RS13495 (NCTC12450_02842) letA 3119409..3120068 (-) 660 WP_128130190.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  EL064_RS13500 (NCTC12450_02843) phhA 3120177..3120995 (-) 819 WP_101901397.1 phenylalanine 4-monooxygenase -
  EL064_RS13505 (NCTC12450_02844) - 3121276..3122130 (-) 855 WP_115705606.1 hypothetical protein -
  EL064_RS13510 (NCTC12450_02845) dinB 3122314..3123381 (-) 1068 WP_115705643.1 DNA polymerase IV -
  EL064_RS13515 (NCTC12450_02846) - 3123443..3124717 (-) 1275 WP_128130191.1 Y-family DNA polymerase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24290.26 Da        Isoelectric Point: 5.1676

>NTDB_id=1118820 EL064_RS13495 WP_128130190.1 3119409..3120068(-) (letA) [Legionella sainthelensi strain NCTC12450]
MIKVLIVDDHALVRMGIRRLLEDMSDVEVVADAESGEQALVLVKQYSPDVVLLDMKMPGIDGWEVTRRLKKSNPHAKVIA
VTAMCSDVLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLEEAQGSPFNVLSEREMQVMLMI
TSGMNVQEISDRLFLSTKTINGYRYRTFEKLGIKNDVELTYLALKHGIIDNPTGLTSEE

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1118820 EL064_RS13495 WP_128130190.1 3119409..3120068(-) (letA) [Legionella sainthelensi strain NCTC12450]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTCGAATGGGTATTCGACGATTACTCGAAGATATGTCAGATGT
AGAAGTTGTTGCTGATGCAGAAAGTGGTGAACAAGCTTTAGTGTTAGTAAAGCAATATTCCCCTGACGTAGTTCTTTTAG
ATATGAAAATGCCTGGGATTGATGGCTGGGAAGTAACGCGTCGTCTGAAAAAATCAAATCCACATGCTAAAGTTATAGCA
GTAACTGCAATGTGTTCTGATGTATTGCCCACCCGTGTTTTGCAATTAGGGGCTATGGGATATCTCACTAAAGAATCGGG
TGCTGAAGAAATGGCTGCCGCGATAAGGAAGGTAGCTAAAGGGGAAAAATACCTTAGTGCAGAAATTGCTCAAAAAATGG
CAATCAATAGCCTGGAAGAAGCACAAGGATCTCCTTTTAATGTATTATCGGAACGAGAAATGCAAGTAATGCTGATGATT
ACAAGTGGTATGAATGTACAAGAAATCAGCGATAGGCTTTTCTTGAGTACTAAAACGATCAATGGCTATCGTTATCGCAC
CTTTGAGAAGTTAGGTATAAAAAATGATGTTGAGCTGACCTACTTAGCTTTGAAGCATGGAATCATAGACAATCCTACTG
GTTTGACGTCAGAAGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

86.758

100

0.868
  letA Legionella pneumophila strain ERS1305867

86.758

100

0.868

Multiple sequence alignment