Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EL064_RS10420 Genome accession   NZ_LR134178
Coordinates   2393718..2394047 (-) Length   109 a.a.
NCBI ID   WP_115701810.1    Uniprot ID   -
Organism   Legionella sainthelensi strain NCTC12450     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2388718..2399047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL064_RS10395 (NCTC12450_02189) - 2389543..2390241 (-) 699 WP_027271245.1 hypothetical protein -
  EL064_RS10400 (NCTC12450_02190) - 2390480..2391022 (+) 543 WP_128130017.1 pseudouridine synthase -
  EL064_RS10405 (NCTC12450_02191) mreD 2391146..2391625 (-) 480 WP_101900851.1 rod shape-determining protein MreD -
  EL064_RS10410 (NCTC12450_02192) mreC 2391625..2392530 (-) 906 WP_027271242.1 rod shape-determining protein MreC -
  EL064_RS10415 (NCTC12450_02193) - 2392508..2393545 (-) 1038 WP_003636696.1 rod shape-determining protein -
  EL064_RS10420 (NCTC12450_02194) comEA 2393718..2394047 (-) 330 WP_115701810.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL064_RS10430 (NCTC12450_02195) - 2394259..2395668 (-) 1410 WP_128130019.1 M20 family metallopeptidase -
  EL064_RS10435 (NCTC12450_02196) - 2395643..2396734 (-) 1092 WP_101900855.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  EL064_RS10440 (NCTC12450_02197) nadC 2396731..2397573 (-) 843 WP_128130020.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EL064_RS10445 (NCTC12450_02198) - 2397566..2399008 (-) 1443 WP_181951378.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11987.17 Da        Isoelectric Point: 10.1702

>NTDB_id=1118816 EL064_RS10420 WP_115701810.1 2393718..2394047(-) (comEA) [Legionella sainthelensi strain NCTC12450]
MKAKCIAVVLSLFVITLPVHATLAKQDLAPKQPPIVVDKIDLNKADLATLTGSIKGIGKKRAEAIIAYRQSHHGFKSLEE
LSDVKGIGQHFVNVNREKLSEVFVIQKME

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1118816 EL064_RS10420 WP_115701810.1 2393718..2394047(-) (comEA) [Legionella sainthelensi strain NCTC12450]
ATGAAAGCAAAATGTATTGCTGTTGTATTATCATTATTTGTTATTACCCTTCCTGTGCATGCCACTCTTGCTAAACAGGA
CTTAGCCCCAAAGCAACCTCCAATAGTAGTTGATAAAATAGATCTCAATAAAGCAGATTTGGCTACCCTAACTGGTTCAA
TTAAAGGTATAGGAAAGAAACGAGCTGAAGCCATTATTGCTTATCGCCAAAGCCATCACGGCTTTAAGTCTCTTGAAGAG
CTCTCTGATGTGAAGGGCATAGGACAGCATTTTGTAAATGTGAATCGTGAAAAGTTAAGTGAAGTATTTGTTATTCAAAA
AATGGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(39-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

61.905

96.33

0.596
  comEA Legionella pneumophila strain ERS1305867

61.905

96.33

0.596

Multiple sequence alignment