Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   EL064_RS09465 Genome accession   NZ_LR134178
Coordinates   2190984..2191319 (-) Length   111 a.a.
NCBI ID   WP_128129952.1    Uniprot ID   -
Organism   Legionella sainthelensi strain NCTC12450     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2185984..2196319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL064_RS09450 (NCTC12450_01991) - 2186203..2189037 (+) 2835 WP_128129951.1 protein SidG -
  EL064_RS09455 (NCTC12450_01992) - 2189006..2190121 (-) 1116 WP_115701547.1 anhydro-N-acetylmuramic acid kinase -
  EL064_RS09460 (NCTC12450_01993) - 2190121..2190906 (-) 786 WP_115701551.1 TatD family hydrolase -
  EL064_RS09465 (NCTC12450_01994) pilZ 2190984..2191319 (-) 336 WP_128129952.1 PilZ domain-containing protein Machinery gene
  EL064_RS09470 (NCTC12450_01995) - 2191375..2192295 (-) 921 WP_115701554.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  EL064_RS09475 (NCTC12450_01996) tmk 2192292..2192930 (-) 639 WP_115701557.1 dTMP kinase -
  EL064_RS09480 (NCTC12450_01997) mltG 2192931..2193929 (-) 999 WP_115701559.1 endolytic transglycosylase MltG -
  EL064_RS09485 (NCTC12450_01998) fabF 2193930..2195168 (-) 1239 WP_101900715.1 beta-ketoacyl-ACP synthase II -
  EL064_RS09490 (NCTC12450_01999) acpP 2195415..2195663 (-) 249 WP_003631752.1 acyl carrier protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12294.15 Da        Isoelectric Point: 5.0640

>NTDB_id=1118815 EL064_RS09465 WP_128129952.1 2190984..2191319(-) (pilZ) [Legionella sainthelensi strain NCTC12450]
MDKQQINCIFPNESALYAAYMPFVKNGGIFIRTNHKIEFGAMVNLSVKLMDEDELYEVDGKVVWITPKGAQGNKTPGIGI
QFVGENSSNLCNKIETYLAGMLKSSQITDTI

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1118815 EL064_RS09465 WP_128129952.1 2190984..2191319(-) (pilZ) [Legionella sainthelensi strain NCTC12450]
ATGGACAAACAACAGATCAACTGCATATTTCCTAATGAGTCAGCGCTGTATGCAGCCTATATGCCCTTTGTAAAAAATGG
TGGAATATTTATTCGCACGAATCACAAAATTGAATTTGGTGCAATGGTGAACTTATCCGTAAAACTAATGGATGAGGATG
AGCTTTACGAGGTTGATGGAAAAGTAGTGTGGATTACGCCTAAGGGTGCTCAAGGGAACAAAACTCCTGGAATAGGAATA
CAGTTTGTGGGAGAAAACAGCAGTAATTTGTGTAATAAAATAGAGACCTATTTAGCAGGCATGTTAAAATCATCTCAGAT
AACAGATACAATTTAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(12-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

72.222

97.297

0.703
  pilZ Legionella pneumophila strain ERS1305867

72.222

97.297

0.703

Multiple sequence alignment