Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   EL022_RS15430 Genome accession   NZ_LR134173
Coordinates   3604142..3604801 (-) Length   219 a.a.
NCBI ID   WP_028381052.1    Uniprot ID   A0A0W0SGC3
Organism   Legionella cherrii strain NCTC11976     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3599142..3609801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL022_RS15415 (NCTC11976_03210) - 3600662..3601225 (-) 564 WP_028381055.1 hypothetical protein -
  EL022_RS15420 (NCTC11976_03211) - 3601234..3601947 (-) 714 WP_028381054.1 L,D-transpeptidase -
  EL022_RS15425 (NCTC11976_03212) uvrC 3602145..3604001 (-) 1857 WP_028381053.1 excinuclease ABC subunit UvrC -
  EL022_RS15430 (NCTC11976_03213) letA 3604142..3604801 (-) 660 WP_028381052.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  EL022_RS15435 (NCTC11976_03214) phhA 3604889..3605707 (-) 819 WP_028381051.1 phenylalanine 4-monooxygenase -
  EL022_RS15440 (NCTC11976_03215) - 3605883..3606980 (+) 1098 WP_028381050.1 competence/damage-inducible protein A -
  EL022_RS15445 (NCTC11976_03216) cgtA 3606936..3607961 (-) 1026 WP_028381049.1 Obg family GTPase CgtA -
  EL022_RS15450 (NCTC11976_03217) rpmA 3608125..3608403 (-) 279 WP_028381048.1 50S ribosomal protein L27 -
  EL022_RS15455 (NCTC11976_03218) rplU 3608416..3608727 (-) 312 WP_028381047.1 50S ribosomal protein L21 -
  EL022_RS15460 (NCTC11976_03219) - 3608925..3609590 (+) 666 WP_028381046.1 50S ribosomal protein L25/general stress protein Ctc -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24375.41 Da        Isoelectric Point: 5.1789

>NTDB_id=1118788 EL022_RS15430 WP_028381052.1 3604142..3604801(-) (letA) [Legionella cherrii strain NCTC11976]
MIKVLIVDDHALVRMGIRRLLEDMSDVEVVADAESGEQALALVKKHSPDVVLLDMKMPGIDGWEVTRRLKKSNPHVKVIA
VTAMCSDVLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGERYLSAEIAQKMAINSLEEVQGSPFDVLSEREMQVMLMI
TTGMNVQEISDRLFLSTKTINGYRYRTFEKLGIKNDVELTYLALKHGIIENPIDLASED

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1118788 EL022_RS15430 WP_028381052.1 3604142..3604801(-) (letA) [Legionella cherrii strain NCTC11976]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTCGAATGGGGATTCGACGATTACTCGAAGATATGTCGGATGT
AGAGGTAGTTGCTGATGCAGAAAGTGGTGAGCAAGCTTTGGCATTAGTAAAAAAACATTCCCCCGACGTGGTCCTTTTAG
ATATGAAAATGCCTGGAATTGATGGCTGGGAAGTAACACGTCGTCTAAAAAAATCAAATCCGCACGTTAAGGTTATTGCT
GTAACTGCAATGTGTTCTGATGTGTTGCCTACTCGAGTTTTACAATTAGGCGCCATGGGCTATCTGACGAAAGAGTCAGG
CGCTGAAGAAATGGCGGCTGCGATACGTAAAGTTGCTAAAGGCGAGAGATATTTAAGTGCAGAGATTGCTCAGAAAATGG
CGATCAATAGTTTGGAAGAAGTACAAGGCTCACCTTTCGATGTATTATCTGAGCGCGAAATGCAAGTCATGTTAATGATT
ACTACTGGTATGAATGTTCAGGAAATAAGTGACCGACTATTCCTTAGTACTAAAACGATTAATGGCTATCGTTACCGTAC
ATTTGAAAAATTAGGTATTAAAAACGATGTAGAGCTTACTTATTTGGCTCTAAAGCATGGAATTATAGAAAACCCCATCG
ATCTGGCATCAGAAGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0SGC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

88.584

100

0.886
  letA Legionella pneumophila strain ERS1305867

88.584

100

0.886

Multiple sequence alignment