Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   EL022_RS11715 Genome accession   NZ_LR134173
Coordinates   2774660..2774998 (-) Length   112 a.a.
NCBI ID   WP_081776867.1    Uniprot ID   -
Organism   Legionella cherrii strain NCTC11976     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2769660..2779998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL022_RS11695 (NCTC11976_02435) - 2769842..2770810 (+) 969 WP_028380395.1 hypothetical protein -
  EL022_RS11700 (NCTC11976_02436) - 2771010..2772335 (-) 1326 WP_237761295.1 MFS transporter -
  EL022_RS11705 (NCTC11976_02437) - 2772548..2773642 (-) 1095 WP_028380392.1 anhydro-N-acetylmuramic acid kinase -
  EL022_RS11710 (NCTC11976_02438) - 2773811..2774587 (-) 777 WP_028380391.1 TatD family hydrolase -
  EL022_RS11715 (NCTC11976_02439) pilZ 2774660..2774998 (-) 339 WP_081776867.1 PilZ domain-containing protein Machinery gene
  EL022_RS11720 (NCTC11976_02440) - 2775044..2775997 (-) 954 WP_035900441.1 DNA polymerase III subunit -
  EL022_RS11725 (NCTC11976_02441) tmk 2775997..2776632 (-) 636 WP_028380388.1 dTMP kinase -
  EL022_RS11730 (NCTC11976_02442) mltG 2776632..2777630 (-) 999 WP_028380387.1 endolytic transglycosylase MltG -
  EL022_RS11735 (NCTC11976_02443) fabF 2777631..2778869 (-) 1239 WP_028380386.1 beta-ketoacyl-ACP synthase II -
  EL022_RS11740 (NCTC11976_02444) acpP 2778945..2779193 (-) 249 WP_003631752.1 acyl carrier protein -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12494.32 Da        Isoelectric Point: 5.0647

>NTDB_id=1118779 EL022_RS11715 WP_081776867.1 2774660..2774998(-) (pilZ) [Legionella cherrii strain NCTC11976]
MDTTQQINCSFLSESDLYAAYMPFVKGGGLFIRTKTNYSFGSEVRLLIKLMDDDESYVVEGKVIWITPKGAQGNKVPGIG
VQFIGENSRYLCNKIETYLAGMLKSSQFTDTI

Nucleotide


Download         Length: 339 bp        

>NTDB_id=1118779 EL022_RS11715 WP_081776867.1 2774660..2774998(-) (pilZ) [Legionella cherrii strain NCTC11976]
ATGGATACAACTCAACAAATCAATTGCTCGTTTCTGAGTGAGTCAGATCTTTATGCAGCTTATATGCCTTTTGTCAAAGG
AGGCGGGTTATTTATCCGGACTAAAACAAACTACTCATTTGGTTCAGAGGTTAGGCTATTAATTAAACTAATGGATGATG
ATGAATCCTATGTTGTTGAGGGTAAAGTAATCTGGATTACTCCTAAAGGAGCGCAGGGAAATAAAGTACCTGGGATAGGA
GTACAATTTATCGGTGAAAACAGCCGCTATTTATGCAATAAAATAGAGACCTATTTAGCAGGCATGTTAAAATCCTCTCA
ATTTACAGATACAATTTAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(7-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

69.369

99.107

0.687
  pilZ Legionella pneumophila strain ERS1305867

69.369

99.107

0.687

Multiple sequence alignment