Detailed information
Bioinformatically predicted
Overview
| Name | rocC | Type | Regulator |
| Locus tag | EL022_RS02415 | Genome accession | NZ_LR134173 |
| Coordinates | 565539..566225 (-) | Length | 228 a.a. |
| NCBI ID | WP_028381593.1 | Uniprot ID | - |
| Organism | Legionella cherrii strain NCTC11976 | ||
| Function | rocR chaperone; repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 560539..571225
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL022_RS02395 (NCTC11976_00492) | gap | 561374..562366 (+) | 993 | WP_028381596.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| EL022_RS02400 (NCTC11976_00493) | - | 562389..563579 (+) | 1191 | WP_028381595.1 | phosphoglycerate kinase | - |
| EL022_RS02405 (NCTC11976_00494) | pyk | 563563..564981 (+) | 1419 | WP_028381594.1 | pyruvate kinase | - |
| EL022_RS02415 (NCTC11976_00496) | rocC | 565539..566225 (-) | 687 | WP_028381593.1 | ProQ/FinO family protein | Regulator |
| EL022_RS16565 | - | 566705..566827 (+) | 123 | WP_272947073.1 | hypothetical protein | - |
| EL022_RS02425 (NCTC11976_00498) | dapB | 566848..567579 (+) | 732 | WP_028381591.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| EL022_RS02430 (NCTC11976_00499) | - | 567622..570117 (-) | 2496 | WP_028381590.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 228 a.a. Molecular weight: 25800.78 Da Isoelectric Point: 10.5207
>NTDB_id=1118756 EL022_RS02415 WP_028381593.1 565539..566225(-) (rocC) [Legionella cherrii strain NCTC11976]
MRKQELHPRTAVINKTQKNKSKKARTDALLWLAAHFPEAFDNSLRIRPLKIGIMDDILLHADNAAEQGISKSKLREAVVL
FTRRLDYLACLKLREMRIDLHGNVVGEVSEEEAEHAAVKIKKRVEKSVRNARKVLTEKIPNPVHSTQPNTSFQAKIGQPS
LPAEDHFPTYPVRSSTYNTLNAPAQPARATAVMVKNKTTRQYDPDVVARLKEKLGLSRSLEEKKEVIE
MRKQELHPRTAVINKTQKNKSKKARTDALLWLAAHFPEAFDNSLRIRPLKIGIMDDILLHADNAAEQGISKSKLREAVVL
FTRRLDYLACLKLREMRIDLHGNVVGEVSEEEAEHAAVKIKKRVEKSVRNARKVLTEKIPNPVHSTQPNTSFQAKIGQPS
LPAEDHFPTYPVRSSTYNTLNAPAQPARATAVMVKNKTTRQYDPDVVARLKEKLGLSRSLEEKKEVIE
Nucleotide
Download Length: 687 bp
>NTDB_id=1118756 EL022_RS02415 WP_028381593.1 565539..566225(-) (rocC) [Legionella cherrii strain NCTC11976]
ATGAGAAAACAGGAGCTGCACCCACGCACCGCTGTTATAAATAAAACTCAAAAAAATAAGTCTAAAAAAGCACGAACAGA
TGCATTGTTATGGCTCGCTGCACATTTTCCTGAAGCATTCGATAATTCATTACGAATTCGTCCATTAAAAATAGGGATTA
TGGATGATATCTTGCTGCATGCAGATAATGCTGCAGAGCAAGGCATTTCCAAAAGTAAATTAAGAGAGGCCGTGGTTTTA
TTCACCCGCCGTCTTGATTATTTGGCATGCCTCAAGTTGCGGGAAATGCGCATTGATTTGCACGGTAATGTCGTTGGTGA
AGTCAGTGAAGAAGAGGCCGAGCACGCTGCAGTTAAGATTAAGAAGCGTGTTGAAAAAAGCGTAAGAAATGCACGTAAAG
TTCTGACGGAAAAAATACCAAATCCAGTCCATTCAACGCAGCCAAATACAAGTTTCCAAGCGAAAATAGGCCAACCATCG
TTACCTGCGGAAGACCACTTTCCTACTTATCCAGTGCGCTCCTCAACCTACAATACTCTAAATGCACCAGCACAACCTGC
TCGAGCTACGGCAGTAATGGTAAAAAATAAAACCACAAGACAATATGATCCCGATGTTGTCGCGCGTTTGAAAGAGAAAT
TAGGGCTCTCGAGAAGCCTTGAAGAGAAAAAGGAAGTCATAGAATAA
ATGAGAAAACAGGAGCTGCACCCACGCACCGCTGTTATAAATAAAACTCAAAAAAATAAGTCTAAAAAAGCACGAACAGA
TGCATTGTTATGGCTCGCTGCACATTTTCCTGAAGCATTCGATAATTCATTACGAATTCGTCCATTAAAAATAGGGATTA
TGGATGATATCTTGCTGCATGCAGATAATGCTGCAGAGCAAGGCATTTCCAAAAGTAAATTAAGAGAGGCCGTGGTTTTA
TTCACCCGCCGTCTTGATTATTTGGCATGCCTCAAGTTGCGGGAAATGCGCATTGATTTGCACGGTAATGTCGTTGGTGA
AGTCAGTGAAGAAGAGGCCGAGCACGCTGCAGTTAAGATTAAGAAGCGTGTTGAAAAAAGCGTAAGAAATGCACGTAAAG
TTCTGACGGAAAAAATACCAAATCCAGTCCATTCAACGCAGCCAAATACAAGTTTCCAAGCGAAAATAGGCCAACCATCG
TTACCTGCGGAAGACCACTTTCCTACTTATCCAGTGCGCTCCTCAACCTACAATACTCTAAATGCACCAGCACAACCTGC
TCGAGCTACGGCAGTAATGGTAAAAAATAAAACCACAAGACAATATGATCCCGATGTTGTCGCGCGTTTGAAAGAGAAAT
TAGGGCTCTCGAGAAGCCTTGAAGAGAAAAAGGAAGTCATAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rocC | Legionella pneumophila str. Paris |
65.401 |
100 |
0.68 |