Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | ELZ64_RS07375 | Genome accession | NZ_LR134169 |
| Coordinates | 1562609..1563157 (-) | Length | 182 a.a. |
| NCBI ID | WP_126375080.1 | Uniprot ID | - |
| Organism | Actinobacillus lignieresii strain NCTC10568 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1557609..1568157
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELZ64_RS07360 (NCTC10568_01574) | - | 1558094..1558612 (+) | 519 | WP_197718020.1 | SprT family zinc-dependent metalloprotease | - |
| ELZ64_RS07365 (NCTC10568_01575) | - | 1558718..1560004 (+) | 1287 | WP_126375078.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ELZ64_RS07370 (NCTC10568_01576) | - | 1560195..1562534 (-) | 2340 | WP_126375079.1 | Tex family protein | - |
| ELZ64_RS07375 (NCTC10568_01577) | pilF | 1562609..1563157 (-) | 549 | WP_126375080.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| ELZ64_RS07380 (NCTC10568_01578) | - | 1563211..1564392 (-) | 1182 | WP_115587407.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| ELZ64_RS07405 (NCTC10568_01583) | gltX | 1565298..1566737 (+) | 1440 | WP_126375081.1 | glutamate--tRNA ligase | - |
| ELZ64_RS07415 (NCTC10568_01585) | yefM | 1567075..1567326 (+) | 252 | WP_005605062.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| ELZ64_RS07420 (NCTC10568_01586) | - | 1567323..1567583 (+) | 261 | WP_009875288.1 | Txe/YoeB family addiction module toxin | - |
| ELZ64_RS07425 (NCTC10568_01587) | - | 1567740..1567907 (-) | 168 | WP_009875287.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20716.44 Da Isoelectric Point: 7.3200
>NTDB_id=1118706 ELZ64_RS07375 WP_126375080.1 1562609..1563157(-) (pilF) [Actinobacillus lignieresii strain NCTC10568]
MNFAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAVLR
MNFAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAVLR
Nucleotide
Download Length: 549 bp
>NTDB_id=1118706 ELZ64_RS07375 WP_126375080.1 1562609..1563157(-) (pilF) [Actinobacillus lignieresii strain NCTC10568]
ATGAACTTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCTGTGCTGTTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGTTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTATTATCAACAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTATGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGTGAGCAGCCTTACTATCATCAAGCGGATAGCTTGGAAAATATCGTGTTGTGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGTACTGCGCTAG
ATGAACTTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCTGTGCTGTTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGTTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTATTATCAACAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTATGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGTGAGCAGCCTTACTATCATCAAGCGGATAGCTTGGAAAATATCGTGTTGTGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGTACTGCGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
68.085 |
100 |
0.703 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.784 |
93.956 |
0.44 |