Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ELZ61_RS10160 Genome accession   NZ_LR134167
Coordinates   2142138..2142662 (-) Length   174 a.a.
NCBI ID   WP_126373393.1    Uniprot ID   A0A3S4L0U1
Organism   Avibacterium volantium strain NCTC3438     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2137138..2147662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ61_RS10145 (NCTC3438_02075) - 2140455..2140760 (-) 306 WP_103854152.1 DUF5374 domain-containing protein -
  ELZ61_RS10150 (NCTC3438_02076) - 2140741..2141418 (-) 678 WP_126373390.1 DUF2572 family protein -
  ELZ61_RS10155 (NCTC3438_02077) comO 2141415..2142137 (-) 723 WP_126373391.1 type II secretion system protein J Machinery gene
  ELZ61_RS10160 (NCTC3438_02078) comN 2142138..2142662 (-) 525 WP_126373393.1 type II secretion system protein Machinery gene
  ELZ61_RS10180 (NCTC3438_02082) pal 2143350..2143814 (-) 465 WP_103854155.1 peptidoglycan-associated lipoprotein Pal -
  ELZ61_RS10185 (NCTC3438_02083) tolB 2143825..2145132 (-) 1308 WP_126373395.1 Tol-Pal system beta propeller repeat protein TolB -
  ELZ61_RS10190 (NCTC3438_02084) tolA 2145160..2146374 (-) 1215 WP_126373398.1 cell envelope integrity protein TolA -
  ELZ61_RS10195 (NCTC3438_02085) tolR 2146391..2146813 (-) 423 WP_103854158.1 colicin uptake protein TolR -
  ELZ61_RS10200 (NCTC3438_02086) tolQ 2146863..2147546 (-) 684 WP_103854159.1 protein TolQ -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19928.33 Da        Isoelectric Point: 9.0291

>NTDB_id=1118657 ELZ61_RS10160 WP_126373393.1 2142138..2142662(-) (comN) [Avibacterium volantium strain NCTC3438]
MAKMKGFTLLEFLIVLLISSMLLLTALPVWQQNQEQSVLSKEQQRLYLFFRTIQRRVENSNQVWFLVANRDLASQKWCIA
AQVKSDKICNCLQPHLCPEELMANIYQPLFPTQTMISSKHYFPQEMARFSGIRNTIQADCFLLQAGQAKTLFSFFNVGSL
KLKQGNSLSACGEP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1118657 ELZ61_RS10160 WP_126373393.1 2142138..2142662(-) (comN) [Avibacterium volantium strain NCTC3438]
ATGGCTAAAATGAAAGGTTTCACGCTATTAGAATTTCTTATCGTGCTATTGATTTCCAGTATGCTATTGCTTACGGCCTT
GCCCGTATGGCAACAGAATCAGGAACAATCGGTGTTAAGCAAAGAGCAACAGCGCTTATATTTATTTTTCCGTACCATTC
AACGGCGCGTAGAAAATTCTAATCAAGTATGGTTTTTAGTGGCAAATCGCGATCTAGCAAGTCAAAAATGGTGCATTGCG
GCCCAAGTCAAAAGCGACAAAATATGCAACTGTTTGCAACCGCACTTATGTCCAGAGGAGCTAATGGCGAATATTTATCA
ACCCTTGTTTCCAACGCAAACAATGATTAGCAGTAAACATTATTTTCCGCAAGAAATGGCTAGATTCAGCGGTATCCGCA
ACACCATTCAAGCGGACTGCTTCTTATTGCAAGCAGGGCAAGCGAAAACCTTATTTTCTTTTTTTAATGTGGGTAGCTTA
AAGCTAAAACAGGGAAATTCGCTCAGTGCGTGCGGAGAGCCTTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4L0U1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

53.571

96.552

0.517

Multiple sequence alignment