Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ELZ61_RS10155 Genome accession   NZ_LR134167
Coordinates   2141415..2142137 (-) Length   240 a.a.
NCBI ID   WP_126373391.1    Uniprot ID   A0A447STF0
Organism   Avibacterium volantium strain NCTC3438     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2136415..2147137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ61_RS10140 (NCTC3438_02074) recC 2137039..2140443 (-) 3405 WP_126373388.1 exodeoxyribonuclease V subunit gamma -
  ELZ61_RS10145 (NCTC3438_02075) - 2140455..2140760 (-) 306 WP_103854152.1 DUF5374 domain-containing protein -
  ELZ61_RS10150 (NCTC3438_02076) - 2140741..2141418 (-) 678 WP_126373390.1 DUF2572 family protein -
  ELZ61_RS10155 (NCTC3438_02077) comO 2141415..2142137 (-) 723 WP_126373391.1 type II secretion system protein J Machinery gene
  ELZ61_RS10160 (NCTC3438_02078) comN 2142138..2142662 (-) 525 WP_126373393.1 type II secretion system protein Machinery gene
  ELZ61_RS10180 (NCTC3438_02082) pal 2143350..2143814 (-) 465 WP_103854155.1 peptidoglycan-associated lipoprotein Pal -
  ELZ61_RS10185 (NCTC3438_02083) tolB 2143825..2145132 (-) 1308 WP_126373395.1 Tol-Pal system beta propeller repeat protein TolB -
  ELZ61_RS10190 (NCTC3438_02084) tolA 2145160..2146374 (-) 1215 WP_126373398.1 cell envelope integrity protein TolA -
  ELZ61_RS10195 (NCTC3438_02085) tolR 2146391..2146813 (-) 423 WP_103854158.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27636.13 Da        Isoelectric Point: 9.1282

>NTDB_id=1118656 ELZ61_RS10155 WP_126373391.1 2141415..2142137(-) (comO) [Avibacterium volantium strain NCTC3438]
MNRYLKGQSLLGLMIALMVSSLLLIAIVKFYQHSQWQIQQMNARLFLQAEIERTLQLIGKDLRRTGFRAAVGKRKVDNLA
LFEQDSQGTSLVISQALGEKPNSCVLFFYDLDNSGCIGSTYTKGLCVENGKNRAKEIERELFGYRLKQKMLETRLTYKNT
VKQKCTKEECQTYIQQPACEKGGWVDLFDDREIVITHFSLRWLKEPLLLVAQLKGQLVKQPHIEYENETVIPLLNQGRTE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1118656 ELZ61_RS10155 WP_126373391.1 2141415..2142137(-) (comO) [Avibacterium volantium strain NCTC3438]
ATGAACCGCTATTTAAAAGGGCAAAGTTTGCTAGGTTTGATGATCGCCTTGATGGTATCTAGCCTATTATTAATCGCCAT
CGTGAAATTTTATCAACATAGCCAATGGCAAATTCAGCAAATGAATGCACGGCTGTTTTTACAAGCCGAAATAGAAAGAA
CCCTGCAATTAATCGGCAAAGATTTACGCCGCACGGGATTTCGTGCAGCCGTTGGAAAGCGTAAAGTGGATAATCTTGCC
TTGTTCGAGCAAGACAGCCAAGGCACAAGTCTTGTTATTAGCCAAGCCTTGGGAGAAAAGCCGAATAGCTGTGTGTTATT
TTTCTATGATTTGGATAATTCAGGTTGTATTGGCTCTACTTACACCAAAGGATTATGCGTTGAAAATGGTAAAAACCGAG
CAAAAGAAATTGAACGTGAATTGTTTGGTTATCGCCTAAAGCAAAAAATGCTAGAAACGCGCTTAACTTACAAAAACACC
GTTAAGCAAAAATGCACAAAAGAAGAATGTCAAACTTACATTCAGCAACCCGCGTGTGAGAAAGGGGGTTGGGTGGATCT
GTTTGATGATCGTGAAATTGTGATCACCCATTTTTCTTTGCGGTGGCTAAAAGAACCTTTGTTACTTGTGGCACAGTTAA
AAGGGCAACTCGTCAAACAACCGCATATTGAATATGAAAATGAAACAGTGATTCCTTTGCTCAATCAAGGCAGGACAGAA
TGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A447STF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

51.477

98.75

0.508

Multiple sequence alignment