Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EL050_RS19445 Genome accession   NZ_LR134165
Coordinates   3834849..3835538 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain NCTC8721     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3829849..3840538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL050_RS19410 (NCTC8721_04005) - 3830017..3830493 (-) 477 WP_025810700.1 flagellar protein FlgN -
  EL050_RS19415 (NCTC8721_04006) flgM 3830512..3830778 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  EL050_RS19420 (NCTC8721_04007) - 3830858..3831277 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  EL050_RS19425 (NCTC8721_04008) comFC 3831336..3832073 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  EL050_RS19430 (NCTC8721_04009) - 3832030..3832314 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  EL050_RS19435 (NCTC8721_04010) comFA 3832369..3833763 (-) 1395 WP_023856393.1 DEAD/DEAH box helicase Machinery gene
  EL050_RS19440 (NCTC8721_04011) - 3833887..3834729 (-) 843 WP_020453118.1 DegV family protein -
  EL050_RS19445 (NCTC8721_04012) degU 3834849..3835538 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  EL050_RS19450 (NCTC8721_04013) degS 3835620..3836777 (-) 1158 WP_020453119.1 histidine kinase Regulator
  EL050_RS19455 (NCTC8721_04014) - 3837001..3837639 (+) 639 WP_023856394.1 YigZ family protein -
  EL050_RS19460 (NCTC8721_04015) - 3837654..3838733 (+) 1080 WP_023856395.1 LCP family protein -
  EL050_RS19465 (NCTC8721_04016) - 3838786..3839169 (-) 384 WP_023856396.1 hypothetical protein -
  EL050_RS19470 (NCTC8721_04017) - 3839278..3840342 (-) 1065 WP_025810697.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=1118623 EL050_RS19445 WP_003185730.1 3834849..3835538(-) (degU) [Bacillus paralicheniformis strain NCTC8721]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1118623 EL050_RS19445 WP_003185730.1 3834849..3835538(-) (degU) [Bacillus paralicheniformis strain NCTC8721]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment