Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EL050_RS19425 Genome accession   NZ_LR134165
Coordinates   3831336..3832073 (-) Length   245 a.a.
NCBI ID   WP_026580174.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain NCTC8721     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3826336..3837073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL050_RS19390 (NCTC8721_04001) fliW 3826486..3826917 (-) 432 WP_025810703.1 flagellar assembly protein FliW -
  EL050_RS19395 (NCTC8721_04002) - 3826939..3827505 (-) 567 WP_025810702.1 DUF6470 family protein -
  EL050_RS19400 (NCTC8721_04003) flgL 3827556..3828467 (-) 912 WP_023856389.1 flagellar hook-associated protein FlgL -
  EL050_RS19405 (NCTC8721_04004) flgK 3828478..3830001 (-) 1524 WP_025810701.1 flagellar hook-associated protein FlgK -
  EL050_RS19410 (NCTC8721_04005) - 3830017..3830493 (-) 477 WP_025810700.1 flagellar protein FlgN -
  EL050_RS19415 (NCTC8721_04006) flgM 3830512..3830778 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  EL050_RS19420 (NCTC8721_04007) - 3830858..3831277 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  EL050_RS19425 (NCTC8721_04008) comFC 3831336..3832073 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  EL050_RS19430 (NCTC8721_04009) - 3832030..3832314 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  EL050_RS19435 (NCTC8721_04010) comFA 3832369..3833763 (-) 1395 WP_023856393.1 DEAD/DEAH box helicase Machinery gene
  EL050_RS19440 (NCTC8721_04011) - 3833887..3834729 (-) 843 WP_020453118.1 DegV family protein -
  EL050_RS19445 (NCTC8721_04012) degU 3834849..3835538 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  EL050_RS19450 (NCTC8721_04013) degS 3835620..3836777 (-) 1158 WP_020453119.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28124.81 Da        Isoelectric Point: 9.9151

>NTDB_id=1118621 EL050_RS19425 WP_026580174.1 3831336..3832073(-) (comFC) [Bacillus paralicheniformis strain NCTC8721]
MTTRFAKAIEKGGNELHCLICEAPLLHSLSWRALFFLRSEEKICRACKDNFIRIEGRTVCPKCGRPQESEELCGDCLKWE
ADPLTRSLLRQNRSVYIYNTFMKEVLARFKFRGDAELVFAFAPLFINAFHQYYRRTPAVLVPIPLSEERKAERGFNQAER
LASLLKKPVMHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHAAACLMTSGEAKSVSSF
TLIRS

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1118621 EL050_RS19425 WP_026580174.1 3831336..3832073(-) (comFC) [Bacillus paralicheniformis strain NCTC8721]
ATGACAACCCGCTTTGCGAAAGCAATCGAAAAGGGAGGAAATGAACTGCATTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGCGCTTTATTCTTTTTACGATCAGAAGAGAAAATATGCAGGGCATGTAAAGACAATTTTATCAGGA
TCGAAGGAAGAACGGTGTGCCCTAAGTGCGGGCGCCCCCAAGAGAGCGAAGAACTTTGCGGTGACTGCCTAAAATGGGAA
GCTGATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATATCTACAATACCTTCATGAAAGAAGTCCTTGC
CCGTTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCTTTATTTATCAATGCTTTCCACCAATATTACC
GCCGCACTCCAGCTGTTTTAGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTCAATCAGGCGGAGAGG
CTTGCTTCCTTATTAAAAAAACCCGTTATGCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAA
AGAACGGATCAAGCCCAAAACGGTTTTTAGAACCGAAAAGGGATCGGTAAAGAATCTGGATATCATATTGATCGACGACT
TGTATACGACAGGGGCGACCCTTCATCATGCCGCTGCTTGTCTGATGACATCCGGTGAGGCAAAATCTGTATCATCATTT
ACATTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.782

97.143

0.522

Multiple sequence alignment