Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BLEG1_RS11765 Genome accession   NZ_CP003923
Coordinates   2381223..2382902 (-) Length   559 a.a.
NCBI ID   WP_038481241.1    Uniprot ID   A0A060M4L8
Organism   Shouchella lehensis G1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2376223..2387902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLEG1_RS11745 (BleG1_2434) - 2377536..2377787 (+) 252 WP_038481229.1 DUF2627 domain-containing protein -
  BLEG1_RS11750 (BleG1_2435) - 2377818..2378573 (-) 756 WP_038481232.1 hypothetical protein -
  BLEG1_RS11755 (BleG1_2436) spo0A 2378751..2379542 (-) 792 WP_038481235.1 sporulation transcription factor Spo0A -
  BLEG1_RS11760 (BleG1_2437) spoIVB 2379811..2381106 (-) 1296 WP_309546696.1 SpoIVB peptidase -
  BLEG1_RS11765 (BleG1_2438) recN 2381223..2382902 (-) 1680 WP_038481241.1 DNA repair protein RecN Machinery gene
  BLEG1_RS11770 (BleG1_2439) ahrC 2382921..2383370 (-) 450 WP_035395786.1 transcriptional regulator AhrC/ArgR -
  BLEG1_RS11775 (BleG1_2440) - 2383563..2384372 (-) 810 WP_038481245.1 TlyA family RNA methyltransferase -
  BLEG1_RS11780 (BleG1_2441) dxs 2384379..2386265 (-) 1887 WP_038481248.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BLEG1_RS11785 (BleG1_2442) - 2386424..2387308 (-) 885 WP_038481251.1 polyprenyl synthetase family protein -
  BLEG1_RS11790 (BleG1_2443) xseB 2387305..2387508 (-) 204 WP_051667748.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 62737.20 Da        Isoelectric Point: 4.6320

>NTDB_id=111853 BLEG1_RS11765 WP_038481241.1 2381223..2382902(-) (recN) [Shouchella lehensis G1]
MLMELTVKNFAIISSLTIPFEKGLTVLTGETGAGKSIIIDAIGLLLGGRGSAEFVRHGEKKAEIEGLFVMEEGHQLEAKL
ESLGIDVEDDMLIMRREITHTGKSICRINGKLMTIGTLREIGQALVDIHGQHEHQSLMRADEHLGLLDQFGGDAIKKALH
EYRKLFNKLQTTMKRINELDQNAQEIAQKTDLYTYQLGEISKTNAQIGEDEQLQKNRNKLANSEKLYEALTRSYEHLYGE
DKGLDYLSGMLSHLETAASIDTDLQPLYEQVSSSYYLIEEASYSIREALDQVDFNPTVLEDVENRLAEIEKVKRKYGESI
ADVLAYAEAIEQELEEMENKDIHLEELQDTRNAIIEDLTIEGEALTDIRKRLAKKLESSLMIELSQLYMEKASFNVQLET
GETFHKNGQDQAEFLISTNEGEPLKSLVKVASGGEISRIMLALKTIFSASQQITSVIFDEVDTGVSGRVAQAIAEKMYRI
SEGSQVLCITHLPQVAAMADHHLFIRKETIEGRVKTDVIQLNDDEKTNELARMLSGFEVTEITKENAKELLELATHKKG

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=111853 BLEG1_RS11765 WP_038481241.1 2381223..2382902(-) (recN) [Shouchella lehensis G1]
ATGCTAATGGAATTAACCGTTAAAAATTTTGCAATCATTTCTTCCCTTACCATTCCATTTGAGAAAGGGTTAACTGTTCT
CACCGGAGAGACTGGTGCTGGAAAGTCGATTATTATTGATGCTATTGGCTTGCTTTTAGGTGGAAGAGGCTCAGCTGAGT
TTGTTCGCCACGGTGAGAAGAAAGCGGAGATTGAAGGCTTGTTTGTAATGGAAGAAGGGCATCAACTAGAAGCTAAGTTG
GAATCCTTAGGCATCGATGTTGAAGATGATATGCTCATTATGAGACGGGAAATTACTCATACAGGTAAAAGCATTTGCCG
CATAAATGGAAAGCTCATGACGATTGGAACCCTACGCGAAATTGGACAAGCTCTTGTTGATATTCACGGTCAGCATGAGC
ACCAGTCTCTAATGAGAGCTGATGAACATTTAGGATTATTAGATCAGTTTGGTGGGGATGCTATAAAAAAAGCGCTACAT
GAATACCGTAAGCTTTTCAATAAGCTTCAAACCACAATGAAGCGCATTAACGAGCTTGATCAAAATGCTCAGGAAATTGC
ACAAAAGACCGATTTATATACGTATCAACTAGGTGAAATCTCCAAGACAAATGCACAAATTGGCGAAGATGAACAACTCC
AAAAAAACCGTAATAAGCTTGCTAATAGTGAAAAATTGTACGAAGCGCTAACAAGAAGCTATGAGCATCTTTATGGAGAA
GATAAGGGTCTTGATTATTTAAGTGGTATGCTAAGTCATTTGGAAACAGCAGCAAGCATTGATACAGATTTGCAACCACT
TTATGAACAAGTGTCATCAAGCTATTACCTCATCGAGGAAGCATCCTACTCGATTCGAGAAGCTTTGGATCAAGTTGATT
TTAATCCAACAGTATTAGAGGATGTAGAAAATCGCCTGGCAGAAATTGAAAAAGTAAAACGTAAATATGGTGAGTCTATA
GCCGATGTGTTAGCGTATGCAGAAGCCATCGAGCAAGAGCTGGAAGAAATGGAAAATAAGGACATTCATTTAGAAGAGCT
TCAAGACACAAGGAACGCCATTATTGAAGATTTAACCATCGAAGGTGAAGCATTAACAGATATTCGTAAACGGTTAGCAA
AAAAGCTTGAATCTTCACTGATGATCGAGTTAAGCCAGTTGTATATGGAAAAAGCATCCTTTAACGTTCAGCTTGAAACA
GGCGAAACATTCCATAAAAATGGTCAAGATCAAGCAGAGTTTTTAATTTCCACAAATGAAGGGGAACCATTAAAGTCTCT
TGTAAAAGTGGCATCAGGTGGAGAAATCTCACGTATCATGCTTGCCCTTAAGACCATTTTCTCTGCTTCTCAACAGATTA
CATCTGTTATTTTTGATGAAGTGGATACAGGTGTGAGCGGTCGAGTGGCGCAAGCGATTGCTGAAAAAATGTACCGTATA
TCAGAGGGCTCACAAGTGTTATGTATTACGCACCTACCTCAAGTAGCAGCTATGGCGGATCACCACTTATTTATACGAAA
AGAAACCATTGAAGGACGAGTGAAAACAGACGTCATTCAATTAAACGACGACGAAAAAACAAACGAACTGGCAAGAATGT
TGTCTGGGTTTGAAGTGACTGAGATTACGAAGGAAAATGCTAAAGAACTGCTTGAACTGGCAACCCACAAAAAAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060M4L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.658

100

0.53

Multiple sequence alignment