Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ELZ55_RS04800 Genome accession   NZ_LR134139
Coordinates   950946..951932 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC4163     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 945946..956932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ55_RS04775 (NCTC4163_00896) opp4B 946159..947121 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  ELZ55_RS04780 (NCTC4163_00897) opp4C 947133..948014 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  ELZ55_RS04785 (NCTC4163_00898) trpS 948056..949045 (-) 990 WP_000448943.1 tryptophan--tRNA ligase -
  ELZ55_RS04790 (NCTC4163_00899) spxA 949340..949735 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ELZ55_RS04795 (NCTC4163_00900) mecA 950106..950825 (+) 720 WP_001217728.1 adaptor protein MecA -
  ELZ55_RS04800 (NCTC4163_00901) coiA 950946..951932 (+) 987 WP_000959292.1 competence protein CoiA Machinery gene
  ELZ55_RS04805 (NCTC4163_00902) pepF 951980..953788 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  ELZ55_RS04810 (NCTC4163_00905) yjbH 954248..955054 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ELZ55_RS04815 (NCTC4163_00906) - 955077..955442 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ELZ55_RS04820 (NCTC4163_00907) - 955546..956139 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  ELZ55_RS04825 (NCTC4163_00908) - 956325..956672 (+) 348 WP_001242102.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=1118430 ELZ55_RS04800 WP_000959292.1 950946..951932(+) (coiA) [Staphylococcus aureus strain NCTC4163]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1118430 ELZ55_RS04800 WP_000959292.1 950946..951932(+) (coiA) [Staphylococcus aureus strain NCTC4163]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994

  coiA Staphylococcus aureus N315

97.561

100

0.976


Multiple sequence alignment