Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ELZ58_RS04690 Genome accession   NZ_LR134091
Coordinates   936890..937876 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC4137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 931890..942876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ58_RS04665 (NCTC4137_00874) opp4B 932103..933065 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  ELZ58_RS04670 (NCTC4137_00875) opp4C 933077..933958 (+) 882 WP_126508721.1 oligopeptide ABC transporter permease -
  ELZ58_RS04675 (NCTC4137_00876) trpS 934000..934989 (-) 990 WP_000448943.1 tryptophan--tRNA ligase -
  ELZ58_RS04680 (NCTC4137_00877) spxA 935284..935679 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ELZ58_RS04685 (NCTC4137_00878) mecA 936050..936769 (+) 720 WP_001217728.1 adaptor protein MecA -
  ELZ58_RS04690 (NCTC4137_00879) coiA 936890..937876 (+) 987 WP_000959292.1 competence protein CoiA Machinery gene
  ELZ58_RS04695 (NCTC4137_00880) pepF 937924..939732 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  ELZ58_RS04700 (NCTC4137_00883) yjbH 940192..940998 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ELZ58_RS04705 (NCTC4137_00884) - 941021..941386 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ELZ58_RS04710 (NCTC4137_00885) - 941490..942083 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  ELZ58_RS04715 (NCTC4137_00886) - 942269..942616 (+) 348 WP_001242102.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=1118155 ELZ58_RS04690 WP_000959292.1 936890..937876(+) (coiA) [Staphylococcus aureus strain NCTC4137]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1118155 ELZ58_RS04690 WP_000959292.1 936890..937876(+) (coiA) [Staphylococcus aureus strain NCTC4137]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994

  coiA Staphylococcus aureus N315

97.561

100

0.976


Multiple sequence alignment