Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ELZ60_RS08460 Genome accession   NZ_LR134090
Coordinates   1692944..1693816 (-) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC9555     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1687919..1708475 1692944..1693816 within 0


Gene organization within MGE regions


Location: 1687919..1708475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ60_RS08445 (NCTC9555_01590) xerC 1687919..1688815 (-) 897 WP_001015610.1 tyrosine recombinase XerC -
  ELZ60_RS08450 (NCTC9555_01591) trmFO 1689232..1690539 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ELZ60_RS08455 (NCTC9555_01592) topA 1690695..1692770 (-) 2076 WP_014532615.1 type I DNA topoisomerase -
  ELZ60_RS08460 (NCTC9555_01593) dprA 1692944..1693816 (-) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  ELZ60_RS08465 (NCTC9555_01594) fmhC 1693988..1695232 (-) 1245 WP_000672856.1 FemA/FemB family glycyltransferase FmhC -
  ELZ60_RS08470 (NCTC9555_01595) - 1695260..1695412 (-) 153 Protein_1596 cell wall hydrolase -
  ELZ60_RS15075 - 1695416..1695472 (-) 57 Protein_1597 YSIRK-type signal peptide-containing protein -
  ELZ60_RS08475 (NCTC9555_01596) sucD 1695698..1696606 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  ELZ60_RS08480 (NCTC9555_01597) sucC 1696628..1697794 (-) 1167 WP_001020804.1 ADP-forming succinate--CoA ligase subunit beta -
  ELZ60_RS08485 (NCTC9555_01598) - 1697903..1698670 (-) 768 WP_000176392.1 ribonuclease HII -
  ELZ60_RS08490 (NCTC9555_01599) ylqF 1698654..1699538 (-) 885 WP_126509049.1 ribosome biogenesis GTPase YlqF -
  ELZ60_RS08495 (NCTC9555_01600) yfhO 1699939..1702545 (+) 2607 WP_126509050.1 lipoteichoic acid-specific glycosyltransferase YfhO -
  ELZ60_RS08505 (NCTC9555_01601) rplS 1703015..1703365 (-) 351 WP_000181404.1 50S ribosomal protein L19 -
  ELZ60_RS08510 (NCTC9555_01602) trmD 1703468..1704205 (-) 738 WP_000687336.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ELZ60_RS08515 (NCTC9555_01603) rimM 1704205..1704708 (-) 504 WP_001261983.1 ribosome maturation factor RimM -
  ELZ60_RS08520 (NCTC9555_01604) rpsP 1704896..1705171 (-) 276 WP_000268754.1 30S ribosomal protein S16 -
  ELZ60_RS08525 (NCTC9555_01605) ffh 1705513..1706880 (-) 1368 WP_000863474.1 signal recognition particle protein -
  ELZ60_RS08530 (NCTC9555_01606) - 1706906..1707238 (-) 333 WP_000531319.1 putative DNA-binding protein -
  ELZ60_RS08535 (NCTC9555_01607) ftsY 1707225..1708475 (-) 1251 WP_000007686.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=1118133 ELZ60_RS08460 WP_000620182.1 1692944..1693816(-) (dprA) [Staphylococcus aureus strain NCTC9555]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1118133 ELZ60_RS08460 WP_000620182.1 1692944..1693816(-) (dprA) [Staphylococcus aureus strain NCTC9555]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGACATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACGAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCGCCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986

Multiple sequence alignment