Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ELZ60_RS06620 Genome accession   NZ_LR134090
Coordinates   1309076..1309762 (+) Length   228 a.a.
NCBI ID   WP_078061108.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC9555     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304076..1314762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ60_RS06585 (NCTC9555_01243) yqeH 1304603..1305703 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  ELZ60_RS06590 (NCTC9555_01244) aroE 1305717..1306523 (+) 807 WP_000666764.1 shikimate dehydrogenase -
  ELZ60_RS06595 (NCTC9555_01245) yhbY 1306527..1306817 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ELZ60_RS06600 (NCTC9555_01246) nadD 1306820..1307389 (+) 570 WP_000725163.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ELZ60_RS06605 (NCTC9555_01247) yqeK 1307379..1307963 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ELZ60_RS06610 (NCTC9555_01248) rsfS 1307964..1308317 (+) 354 WP_001088020.1 ribosome silencing factor -
  ELZ60_RS06615 (NCTC9555_01249) - 1308320..1309036 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ELZ60_RS06620 (NCTC9555_01250) comEA 1309076..1309762 (+) 687 WP_078061108.1 ComEA family DNA-binding protein Machinery gene
  ELZ60_RS06625 (NCTC9555_01251) - 1309854..1310315 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ELZ60_RS06630 (NCTC9555_01252) comEC 1310320..1312521 (+) 2202 WP_041204299.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ELZ60_RS06635 (NCTC9555_01253) holA 1312578..1313552 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ELZ60_RS06640 (NCTC9555_01254) rpsT 1313597..1313848 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25764.51 Da        Isoelectric Point: 9.5413

>NTDB_id=1118120 ELZ60_RS06620 WP_078061108.1 1309076..1309762(+) (comEA) [Staphylococcus aureus strain NCTC9555]
MVLLYQFLLRYKDFLTQCKLYIISAVVLIMVLIGFIFWRQDDYTTRNFENKDTALKQSTSEISSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSEWMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1118120 ELZ60_RS06620 WP_078061108.1 1309076..1309762(+) (comEA) [Staphylococcus aureus strain NCTC9555]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGCAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTACAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATGGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.916

99.561

0.965
  comEA Staphylococcus aureus N315

96.916

99.561

0.965

Multiple sequence alignment