Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ELZ48_RS04040 Genome accession   NZ_LR134089
Coordinates   847946..848365 (+) Length   139 a.a.
NCBI ID   WP_037538032.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain NCTC7666     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 842946..853365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ48_RS04010 (NCTC7666_00837) atpD 843062..844474 (+) 1413 WP_002482726.1 F0F1 ATP synthase subunit beta -
  ELZ48_RS04015 (NCTC7666_00838) - 844494..844898 (+) 405 WP_002482727.1 F0F1 ATP synthase subunit epsilon -
  ELZ48_RS04020 (NCTC7666_00839) - 845160..845393 (+) 234 WP_011302682.1 DUF1146 family protein -
  ELZ48_RS04025 (NCTC7666_00840) murA 845500..846765 (+) 1266 WP_002482728.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ELZ48_RS04030 (NCTC7666_00841) fabZ 846820..847257 (+) 438 WP_002482729.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ELZ48_RS04035 (NCTC7666_00842) - 847315..847755 (-) 441 WP_002482730.1 YwpF-like family protein -
  ELZ48_RS04040 (NCTC7666_00843) ssb 847946..848365 (+) 420 WP_037538032.1 single-stranded DNA-binding protein Machinery gene
  ELZ48_RS04045 (NCTC7666_00844) - 848791..849507 (+) 717 WP_115338428.1 transglycosylase family protein -
  ELZ48_RS04050 (NCTC7666_00846) tenA 849814..850503 (+) 690 WP_002482733.1 thiaminase II -
  ELZ48_RS04055 (NCTC7666_00847) thiD 850496..851317 (+) 822 WP_002482734.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ELZ48_RS04060 (NCTC7666_00848) thiM 851310..852101 (+) 792 WP_002482735.1 hydroxyethylthiazole kinase -
  ELZ48_RS04065 (NCTC7666_00849) thiE 852101..852739 (+) 639 WP_002482736.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16100.49 Da        Isoelectric Point: 7.7651

>NTDB_id=1118074 ELZ48_RS04040 WP_037538032.1 847946..848365(+) (ssb) [Staphylococcus saprophyticus strain NCTC7666]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQNPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNVFKDINVQNNDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1118074 ELZ48_RS04040 WP_037538032.1 847946..848365(+) (ssb) [Staphylococcus saprophyticus strain NCTC7666]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAAACCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGTATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597

Multiple sequence alignment