Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ELZ50_RS08390 Genome accession   NZ_LR134087
Coordinates   1668845..1669531 (-) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC7121     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1663845..1674531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ50_RS08370 (NCTC7121_01580) rpsT 1664759..1665010 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ELZ50_RS08375 (NCTC7121_01581) holA 1665055..1666029 (-) 975 WP_001836898.1 DNA polymerase III subunit delta -
  ELZ50_RS08380 (NCTC7121_01582) comEC 1666086..1668287 (-) 2202 WP_001815444.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ELZ50_RS08385 (NCTC7121_01583) - 1668292..1668753 (-) 462 WP_000439693.1 ComE operon protein 2 -
  ELZ50_RS08390 (NCTC7121_01584) comEA 1668845..1669531 (-) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  ELZ50_RS08395 (NCTC7121_01585) - 1669571..1670287 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ELZ50_RS08400 (NCTC7121_01586) rsfS 1670290..1670643 (-) 354 WP_001088020.1 ribosome silencing factor -
  ELZ50_RS08405 (NCTC7121_01587) yqeK 1670644..1671228 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ELZ50_RS08410 (NCTC7121_01588) nadD 1671218..1671787 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ELZ50_RS08415 (NCTC7121_01589) yhbY 1671790..1672080 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ELZ50_RS08420 (NCTC7121_01590) aroE 1672084..1672890 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  ELZ50_RS08425 (NCTC7121_01591) yqeH 1672904..1674004 (-) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=1118051 ELZ50_RS08390 WP_072353822.1 1668845..1669531(-) (comEA) [Staphylococcus aureus strain NCTC7121]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1118051 ELZ50_RS08390 WP_072353822.1 1668845..1669531(-) (comEA) [Staphylococcus aureus strain NCTC7121]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978

Multiple sequence alignment