Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   NJ8700_RS06120 Genome accession   NZ_CP009230
Coordinates   1352954..1353694 (-) Length   246 a.a.
NCBI ID   WP_148207231.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347954..1358694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS06100 (NJ8700_06250) rimI 1348124..1348567 (+) 444 WP_005701123.1 ribosomal protein S18-alanine N-acetyltransferase -
  NJ8700_RS06105 (NJ8700_06255) recC 1348570..1351947 (-) 3378 WP_012771679.1 exodeoxyribonuclease V subunit gamma -
  NJ8700_RS06110 (NJ8700_06260) comQ 1351985..1352287 (-) 303 WP_005701125.1 DUF5374 domain-containing protein Machinery gene
  NJ8700_RS06115 (NJ8700_06265) comP 1352271..1352957 (-) 687 WP_005701126.1 DUF2572 family protein Machinery gene
  NJ8700_RS06120 (NJ8700_06270) comO 1352954..1353694 (-) 741 WP_148207231.1 type II secretion system protein J Machinery gene
  NJ8700_RS06125 (NJ8700_06275) comN 1353684..1354205 (-) 522 WP_005701128.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NJ8700_RS06145 (NJ8700_06295) pal 1354951..1355415 (-) 465 WP_005701129.1 peptidoglycan-associated lipoprotein Pal -
  NJ8700_RS06150 (NJ8700_06300) tolB 1355430..1356710 (-) 1281 WP_005701130.1 Tol-Pal system beta propeller repeat protein TolB -
  NJ8700_RS06155 (NJ8700_06305) tolA 1356746..1357996 (-) 1251 WP_005701131.1 cell envelope integrity protein TolA -
  NJ8700_RS06160 (NJ8700_06310) tolR 1358015..1358437 (-) 423 WP_005701133.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 28086.19 Da        Isoelectric Point: 8.4592

>NTDB_id=111801 NJ8700_RS06120 WP_148207231.1 1352954..1353694(-) (comO) [Aggregatibacter aphrophilus NJ8700]
MKNRIRLKQKYHSGQSLVSLMLSVSLSSFLLLVILQFYSQHQQQNQEILLRLQLQTELQRVVQLMGKDLARSGFRAVSDK
LTKDNLSLFEQPNQPSAITIAQMNAEKNNSCVVFFYDLDANGCVGGQYKGDTCLANGRNATKEIERELFGYRLNKKMLET
RLTYKSAVKQNCSLEDCQRYTQQSACNHGGWVDLLDEKEYEISHLTFDWVAEQKGIEVRLIGNLKQNKKISYETAIVVPL
LNGEVP

Nucleotide


Download         Length: 741 bp        

>NTDB_id=111801 NJ8700_RS06120 WP_148207231.1 1352954..1353694(-) (comO) [Aggregatibacter aphrophilus NJ8700]
ATGAAGAATAGAATTAGGTTAAAACAAAAATACCATTCAGGACAAAGTTTGGTGAGCTTAATGCTTTCGGTGTCGCTTTC
TTCGTTTTTACTCTTGGTAATTTTGCAGTTTTATAGTCAACATCAGCAACAGAATCAGGAGATTCTTTTACGTTTGCAGT
TACAAACGGAGTTACAACGCGTTGTTCAGCTTATGGGAAAAGATTTGGCGCGTAGCGGTTTTCGGGCAGTGAGCGACAAG
TTAACAAAAGATAACTTATCCTTATTTGAACAACCAAATCAGCCCTCAGCAATCACTATTGCTCAAATGAATGCAGAGAA
AAACAACAGTTGTGTTGTATTTTTTTATGATCTTGATGCTAACGGTTGTGTGGGAGGGCAATATAAAGGCGATACTTGTC
TGGCGAATGGGCGAAATGCAACCAAAGAAATTGAACGCGAATTATTCGGTTATCGGCTCAATAAAAAAATGCTGGAAACC
CGTTTAACGTATAAAAGTGCGGTGAAACAAAATTGCAGTTTAGAAGATTGTCAACGATATACCCAACAATCTGCCTGTAA
TCACGGTGGTTGGGTCGATTTGTTAGATGAAAAAGAATATGAAATCTCTCATTTAACCTTTGATTGGGTGGCAGAACAAA
AAGGCATTGAAGTGCGTTTAATTGGGAATTTAAAGCAGAATAAAAAAATTTCCTACGAAACCGCCATCGTTGTGCCGTTA
TTAAACGGGGAAGTGCCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

55.238

85.366

0.472