Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ELZ49_RS02710 Genome accession   NZ_LR134086
Coordinates   561895..562464 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13142     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 556895..567464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ49_RS02685 (NCTC13142_00510) cysE 558108..558755 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ELZ49_RS02690 (NCTC13142_00511) cysS 558739..560139 (+) 1401 WP_038411714.1 cysteine--tRNA ligase -
  ELZ49_RS02695 (NCTC13142_00512) - 560132..560536 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ELZ49_RS02700 (NCTC13142_00513) rlmB 560544..561290 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ELZ49_RS02705 (NCTC13142_00514) - 561290..561814 (+) 525 WP_000664732.1 NYN domain-containing protein -
  ELZ49_RS02710 (NCTC13142_00515) sigH 561895..562464 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  ELZ49_RS02715 rpmG 562579..562722 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ELZ49_RS02720 (NCTC13142_00516) secE 562778..562960 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ELZ49_RS02725 (NCTC13142_00517) nusG 562973..563521 (+) 549 WP_001288298.1 transcription termination/antitermination protein NusG -
  ELZ49_RS02730 (NCTC13142_00518) rplK 563702..564124 (+) 423 WP_001085795.1 50S ribosomal protein L11 -
  ELZ49_RS02735 (NCTC13142_00519) rplA 564332..565024 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ELZ49_RS02745 (NCTC13142_00521) rplJ 565296..565796 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  ELZ49_RS02750 (NCTC13142_00522) rplL 565839..566207 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ELZ49_RS02755 (NCTC13142_00523) - 566382..566990 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=1117989 ELZ49_RS02710 WP_000872873.1 561895..562464(+) (sigH) [Staphylococcus aureus strain NCTC13142]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1117989 ELZ49_RS02710 WP_000872873.1 561895..562464(+) (sigH) [Staphylococcus aureus strain NCTC13142]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment