Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ELZ47_RS01100 Genome accession   NZ_LR134002
Coordinates   206451..207812 (+) Length   453 a.a.
NCBI ID   WP_126435014.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 201451..212812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS12075 - 202621..202759 (+) 139 Protein_187 ABC transporter ATP-binding protein -
  ELZ47_RS12080 - 202735..203466 (+) 732 Protein_188 ABC transporter ATP-binding protein -
  ELZ47_RS12085 rcrQ 203602..204390 (+) 789 WP_420031188.1 ABC transporter ATP-binding protein Regulator
  ELZ47_RS01085 (NCTC10904_00213) - 204571..205260 (+) 690 WP_002907876.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  ELZ47_RS01090 (NCTC10904_00214) - 205478..205921 (+) 444 WP_126435012.1 dUTP diphosphatase -
  ELZ47_RS01095 (NCTC10904_00215) - 205923..206438 (+) 516 WP_126435013.1 histidine phosphatase family protein -
  ELZ47_RS01100 (NCTC10904_00216) radA 206451..207812 (+) 1362 WP_126435014.1 DNA repair protein RadA Machinery gene
  ELZ47_RS01105 (NCTC10904_00217) - 207927..208643 (+) 717 WP_126435015.1 TIGR00266 family protein -
  ELZ47_RS01110 - 208757..209451 (+) 695 Protein_195 TIGR00266 family protein -
  ELZ47_RS01115 (NCTC10904_00220) - 209600..210097 (+) 498 WP_126435016.1 beta-class carbonic anhydrase -
  ELZ47_RS01120 (NCTC10904_00221) - 210195..211061 (+) 867 WP_126435017.1 ABC transporter permease -
  ELZ47_RS01125 (NCTC10904_00222) - 211058..211816 (+) 759 WP_126435018.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49591.92 Da        Isoelectric Point: 5.7873

>NTDB_id=1117794 ELZ47_RS01100 WP_126435014.1 206451..207812(+) (radA) [Streptococcus sanguinis strain NCTC 10904]
MAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFIEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFNRV
LGGGVVLGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTEIE
KIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVINPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIR
RVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1117794 ELZ47_RS01100 WP_126435014.1 206451..207812(+) (radA) [Streptococcus sanguinis strain NCTC 10904]
ATCGCTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATATCATTCGCCCAAGTATCTAGGCCGCTGTCCCAATTG
TGGCTCTTGGTCTTCTTTTATTGAGGAAGTAGAGGCTGCAGAAGTCAAGCATGCCCGTGTTTCCTTGACTGGCGAAAAGA
CTCGGCCTATGAAGCTGGCTGAGGTCACTTCGATCGATGTCAACCGTACCAAGACAGAAATGGACGAGTTCAATCGTGTG
CTGGGTGGTGGCGTAGTGCTTGGCAGTCTGGTTCTGATTGGCGGGGATCCTGGTATCGGGAAGTCCACCCTGCTTCTGCA
GGTATCCACCCAGCTTTCTCATCAGGGCACAGTCCTTTATGTCAGCGGGGAGGAATCAGCTGAGCAGATTAAGCTGCGGG
CGGAACGCCTCGGTGATATTGACAGTGAATTTTATCTCTATGCTGAGACCAATATGCAAAACATCCGCACGGAGATTGAG
AAAATCAAGCCAGATTTTCTGATTATTGACTCCATCCAGACGGTTATGTCGCCGGAAATTTCCAGCGTTCAAGGCTCTGT
TTCTCAGGTCCGTGAGGTGACCGCGGAGCTCATGCAGCTGGCCAAGACCAACAATATCGCGACCTTTATCGTTGGTCACA
TGACCAAGGAAGGAACCTTAGCTGGCCCCCGAACGCTAGAGCACATGGTGGACACAGTGCTTTATTTTGAGGGCGAACGT
CAGCACACTTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGTTCGACCAATGAGATTGGTATTTTTGAAATGCAGTC
TGGCGGACTAGTTGAGGTTATCAACCCCAGTGAAGTCTTTCTGGAAGAACGGCTGGATGGTGCGACAGGCTCTTCTATCG
TCGTGACTATGGAAGGAACACGGCCGATTTTAGCAGAGGTACAGGCTTTGGTGACACCGACCATGTTCGGCAATGCCAAG
AGGACCACGACTGGTCTAGACTTTAACCGAGCCAGCCTCATCATGGCAGTTCTGGAAAAGAGGGCAGGACTCCTCCTGCA
AAATCAAGATGCCTACCTCAAGTCTGCTGGCGGCGTCAAGCTAGATGAGCCAGCGATTGATTTGGCAGTAGCAGTAGCCA
TTGCTTCCAGTTACAAGGATTTACCTACCAATCCCCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGTGAAATCCGC
CGGGTCAACCGCATCGAGCAGCGCATCAACGAAGCAGCAAAGCTGGGTTTCACCAAAGTCTACGCTCCTAAAAACTCTCT
GAACGGTCTCAAAGTTCCAGACAATATCCAAGTCATCGGTGTGACGACGATTGGGGAAGTCTTAAAGAAAGTATTTTCCT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(61-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.391

100

0.914
  radA Streptococcus pneumoniae Rx1

91.17

100

0.912
  radA Streptococcus pneumoniae D39

91.17

100

0.912
  radA Streptococcus pneumoniae R6

91.17

100

0.912
  radA Streptococcus pneumoniae TIGR4

91.17

100

0.912
  radA Streptococcus mitis SK321

91.17

100

0.912
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

100

0.625

Multiple sequence alignment