Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ELZ45_RS10855 Genome accession   NZ_LR133917
Coordinates   2103475..2103870 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC8317     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2098475..2108870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ45_RS10830 (NCTC8317_02034) thiE 2099075..2099716 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  ELZ45_RS10835 (NCTC8317_02035) thiM 2099718..2100509 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  ELZ45_RS10840 (NCTC8317_02036) thiD 2100493..2101323 (-) 831 WP_000594967.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ELZ45_RS10845 (NCTC8317_02037) tenA 2101316..2102005 (-) 690 WP_000396067.1 thiaminase II -
  ELZ45_RS10850 (NCTC8317_02039) sceD 2102391..2103086 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  ELZ45_RS10855 (NCTC8317_02040) ssb 2103475..2103870 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ELZ45_RS10860 (NCTC8317_02041) - 2104064..2104504 (+) 441 WP_000846746.1 YwpF-like family protein -
  ELZ45_RS10865 (NCTC8317_02042) fabZ 2104563..2105003 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ELZ45_RS10870 (NCTC8317_02043) murA 2105037..2106302 (-) 1266 WP_000358010.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ELZ45_RS10875 (NCTC8317_02044) - 2106413..2106646 (-) 234 WP_000384524.1 DUF1146 family protein -
  ELZ45_RS10880 - 2106778..2106870 (-) 93 WP_031824610.1 hypothetical protein -
  ELZ45_RS10885 (NCTC8317_02045) - 2107206..2107610 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1117655 ELZ45_RS10855 WP_000932694.1 2103475..2103870(-) (ssb) [Staphylococcus aureus strain NCTC8317]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1117655 ELZ45_RS10855 WP_000932694.1 2103475..2103870(-) (ssb) [Staphylococcus aureus strain NCTC8317]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment