Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   EW031_RS02755 Genome accession   NZ_LR130518
Coordinates   554550..555119 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2986 isolate BPH2986     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 549550..560119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW031_RS02730 cysE 550763..551410 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  EW031_RS02735 cysS 551394..552794 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  EW031_RS02740 - 552787..553191 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  EW031_RS02745 rlmB 553199..553945 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EW031_RS02750 - 553945..554469 (+) 525 WP_000664738.1 NYN domain-containing protein -
  EW031_RS02755 sigH 554550..555119 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  EW031_RS02760 rpmG 555234..555377 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  EW031_RS02765 secE 555433..555615 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  EW031_RS02770 nusG 555628..556176 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  EW031_RS02775 rplK 556357..556779 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  EW031_RS02780 rplA 556987..557679 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  EW031_RS02790 rplJ 557951..558451 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  EW031_RS02795 rplL 558494..558862 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  EW031_RS02800 - 559037..559645 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=1116934 EW031_RS02755 WP_000872873.1 554550..555119(+) (sigH) [Staphylococcus aureus strain BPH2986 isolate BPH2986]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1116934 EW031_RS02755 WP_000872873.1 554550..555119(+) (sigH) [Staphylococcus aureus strain BPH2986 isolate BPH2986]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment