Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EW033_RS12580 Genome accession   NZ_LR130515
Coordinates   2374287..2374682 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2947 isolate BPH2947     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2369287..2379682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW033_RS12555 thiE 2369887..2370528 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  EW033_RS12560 thiM 2370530..2371321 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  EW033_RS12565 thiD 2371305..2372135 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EW033_RS12570 tenA 2372128..2372817 (-) 690 WP_000396077.1 thiaminase II -
  EW033_RS12575 sceD 2373203..2373898 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  EW033_RS12580 ssb 2374287..2374682 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  EW033_RS12585 - 2374876..2375316 (+) 441 WP_000846746.1 YwpF-like family protein -
  EW033_RS12590 fabZ 2375375..2375815 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EW033_RS12595 murA 2375849..2377114 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EW033_RS12600 - 2377225..2377458 (-) 234 WP_000384523.1 DUF1146 family protein -
  EW033_RS12605 - 2377590..2377682 (-) 93 WP_001790611.1 hypothetical protein -
  EW033_RS12610 - 2378020..2378424 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1116922 EW033_RS12580 WP_000932694.1 2374287..2374682(-) (ssb) [Staphylococcus aureus strain BPH2947 isolate BPH2947]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1116922 EW033_RS12580 WP_000932694.1 2374287..2374682(-) (ssb) [Staphylococcus aureus strain BPH2947 isolate BPH2947]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment